View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0221_low_6 (Length: 340)
Name: NF0221_low_6
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0221_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 228
Target Start/End: Complemental strand, 50834610 - 50834411
Alignment:
| Q |
29 |
aatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50834610 |
aatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattaca |
50834511 |
T |
|
| Q |
129 |
cacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaatagggt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50834510 |
cacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaatagggt |
50834411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 50841243 - 50841442
Alignment:
| Q |
29 |
aatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50841243 |
aatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaattaca |
50841342 |
T |
|
| Q |
129 |
cacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaatagggt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50841343 |
cacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaatagggt |
50841442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 43618669 - 43618697
Alignment:
| Q |
174 |
tgagggcataagaagaagggtttttgtgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43618669 |
tgagggcataagaagaagggtttttgtgt |
43618697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1965 times since January 2019
Visitors: 2394