View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0221_low_7 (Length: 334)
Name: NF0221_low_7
Description: NF0221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0221_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 5288547 - 5288249
Alignment:
| Q |
1 |
cactcgtcgaccgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288547 |
cactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
5288448 |
T |
|
| Q |
101 |
ggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttatagttaagttgattatatacttactttttatgtcatagaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288447 |
ggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttttagttaagttgattatatacttactttttatgtcatagaaat |
5288348 |
T |
|
| Q |
201 |
aaaaccgttgatgaataaactgaaagttttgaataacatatcatcttcacgatcgtcttccactaggactttcaaagctattgctgatccacctaccac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5288347 |
aaaaccgttgatgaataaactgaaagttttgaataacatgtcatctttacgatcgtcttccactaggacttccaaagctattgctgatccacctaccac |
5288249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8034866 - 8035081
Alignment:
| Q |
1 |
cactcgtcgaccgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaa |
100 |
Q |
| |
|
||||||| || | |||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8034866 |
cactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgattttgttgctcccagtaccttctttcaa |
8034965 |
T |
|
| Q |
101 |
ggttagttactgatctctgttttactacttgtaatgttgttgatttcgatttttgttatagttaagttgattatatacttactttttatgtcatagaaat |
200 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8034966 |
ggttggttactgatctctgtattactacttgaaatgttgttgatttcaatttttgttatagtaaagttgattatatacttacttgaaatgtcatagaaat |
8035065 |
T |
|
| Q |
201 |
aaaaccgttgatgaat |
216 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
8035066 |
aaaatcgtggatgaat |
8035081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 51380021 - 51379932
Alignment:
| Q |
210 |
gatgaataaactgaaagttttgaataacatatcatcttcacgatcgtcttccactaggactttcaaagctattgctgatccacctaccac |
299 |
Q |
| |
|
|||| ||||| | ||||||||||||||||| ||||| |||||| | |||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
51380021 |
gatggataaattcaaagttttgaataacatgtcatcctcacgaccctcttccgctaggatttttaaagctattgctgatccacctaccac |
51379932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 51380148 - 51380100
Alignment:
| Q |
61 |
ttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51380148 |
ttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta |
51380100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1657 times since January 2019
Visitors: 2392