View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_high_10 (Length: 480)
Name: NF0223_high_10
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 5326238 - 5326663
Alignment:
| Q |
11 |
cagagagagcaacaatcttaatcacccttgccattatttgttatcaatatatgttccaaatgcaaattgtaaattgtaaatgaattgatttgttttgtta |
110 |
Q |
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| T |
5326238 |
cagagagagcaacaatcttaatcacccttgccattatttgttatcaatatgt--------tgcaagttgtagattgtaaatgaat-gatttgttttgtta |
5326328 |
T |
|
| Q |
111 |
ttgaaaagaatgtgnnnnnnnnnnnnnnnnngatggtgctcgtaaatattatattacgtggggtatagtaaatggtaataacatatatatccttgttgtt |
210 |
Q |
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| T |
5326329 |
ttgaaaagaatgtgatatatttatatata--gatggtgctcgtaaatattatattacgtagggcatagtaaatggtaataacatatatatccttgttgtt |
5326426 |
T |
|
| Q |
211 |
gccagattctaaattccaaattggattcgtgctacaattttaaattctccagttgcaatggcaaaagtatagtgttatannnnnnnnataaagaaaagta |
310 |
Q |
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| T |
5326427 |
gccagattctaaattccaaattggattcgtgcttcaattttaaattacccggttgcaatggcaaaagtatagtgttatattttttt-ataaagaaaagta |
5326525 |
T |
|
| Q |
311 |
tggtgttatttgtgtgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacagtaattttaaggaaggaagacaacactaatggaggt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
5326526 |
tggtgttatttgtgtgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacattaattttaaggaatgaagacaacactaatggaggt |
5326625 |
T |
|
| Q |
411 |
gaagaataaaaattaataccgccatgacctaccccaat |
448 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
5326626 |
gaagaataaaaattaataccgccatgacctactccaat |
5326663 |
T |
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