View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_high_15 (Length: 471)
Name: NF0223_high_15
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 29 - 458
Target Start/End: Original strand, 39245264 - 39245693
Alignment:
| Q |
29 |
aaaaactaacctcaatgaagaactgtgattaattctataccttccgttactagtatactcttcaatgctcacctcatgcagctcttttttatcatttggg |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39245264 |
aaaaactaacctcaatgaagaactgtgattaattctataccttccgttactagtatactcttcaatgctcacctcatgcagctctttttgatcatttggg |
39245363 |
T |
|
| Q |
129 |
acatttaatttccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaa |
228 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39245364 |
acatttaatttccactttctcatagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaa |
39245463 |
T |
|
| Q |
229 |
acaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245464 |
acaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggc |
39245563 |
T |
|
| Q |
329 |
taaaatggctccaattataatgtagaacacccaccaattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctcca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245564 |
taaaatggctccaattataatgtagaacacccaccaattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctcca |
39245663 |
T |
|
| Q |
429 |
agtgtggtgatgctgggcttaattccccct |
458 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
39245664 |
agtgtggtgatgctgggcttaattccccct |
39245693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 39251261 - 39251695
Alignment:
| Q |
29 |
aaaaactaacctcaatgaagaactgtgattaattctataccttccgttactagtat---actcttcaatgctcacctcatgcagctcttttttatcattt |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
39251261 |
aaaaactaacctcaatgaagagctgtgattaattctataccttcctttactagtattatactcttcaatgctcacctcatgcaactcttttggatcattt |
39251360 |
T |
|
| Q |
126 |
gggacatttaatttccactttctcacagcagcaacaaagacttgaaccat----tctagttaaaggacttcctgaaggcaatttatgtctataaattggt |
221 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||| ||||||| ||||| ||||| ||| |||||||||||| |||| |
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| T |
39251361 |
gggacatttaagttccactttctcaaggcagccacaaaaacttgaaccatatattctgattaaagggcttccagaaggtaatctatgtctataaagtggt |
39251460 |
T |
|
| Q |
222 |
gttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
39251461 |
gttccaaacaaaaacaccaatgttgaaaaaacaagcaagatggttggaatcccataaccaagggcaaa-ccaacattgtcttgtatgtagactaatcctg |
39251559 |
T |
|
| Q |
322 |
tttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtc |
421 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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|
| T |
39251560 |
tttcggctaaaatgcctccagttataatgcagaacacccaccaattgaaaaaggaaagtttttgggacctctctttaggctcaaactcatcaaattggtc |
39251659 |
T |
|
| Q |
422 |
ggctccaagtgtggtgatgctgggcttaattccccc |
457 |
Q |
| |
|
||||||| |||||| |||| |||||||||| ||||| |
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|
| T |
39251660 |
ggctccaggtgtggagatgttgggcttaatcccccc |
39251695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 33 - 458
Target Start/End: Original strand, 39260864 - 39261289
Alignment:
| Q |
33 |
actaacctcaatgaagaactgtgattaattctataccttccgttactagtatactcttcaatgctcacctcatgcagctcttttttatcatttgggacat |
132 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
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|
| T |
39260864 |
actaaccttagtgaagaactgtgattaattctataccttcctttactagtatactcttcaatgctcacctcatgtagctcttttgaatcaattgggacat |
39260963 |
T |
|
| Q |
133 |
ttaatttccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaa |
232 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| ||| || || |||| |
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|
| T |
39260964 |
ttaacttccactttctcatagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacac |
39261063 |
T |
|
| Q |
233 |
aaacaccaatgttgaaaaaacaagcaatatggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaa |
332 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| || |
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| T |
39261064 |
aaacaccaatatggaaacaacaagcaatatggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaa |
39261163 |
T |
|
| Q |
333 |
atggctccaattataatgtagaacacccaccaattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtg |
432 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| | |
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|
| T |
39261164 |
atggttccaattaaaatgtaaaacacccaccaattgtagaatgaaagtttttgggacctctctttaggctcaaactcatcaaattggtctgctccaatgg |
39261263 |
T |
|
| Q |
433 |
tggtgatgctgggcttaattccccct |
458 |
Q |
| |
|
||| ||| |||||||| |||||||| |
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|
| T |
39261264 |
tggaaatgttgggcttagttccccct |
39261289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 310
Target Start/End: Original strand, 39239493 - 39239722
Alignment:
| Q |
81 |
gtatactcttcaatgctcacctcatgcagctcttttttatcatttgggacatttaatttccactttctcacagcagcaacaaagacttgaaccattctag |
180 |
Q |
| |
|
||||||||||| || |||| |||||| ||||| |||||||| | ||||||| | ||||| ||||| | |||||| ||||||||||||| ||| || | |
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|
| T |
39239493 |
gtatactcttccatactcagctcatgtagctcctttttatcttctgggacacgtgccttccattttcttatagcagccacaaagacttgaagcatccttg |
39239592 |
T |
|
| Q |
181 |
ttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataacc |
280 |
Q |
| |
|
||| ||| || |||| ||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| |||| |||||||||| ||||| || |
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|
| T |
39239593 |
ttatagggctgcctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgcaaggccaatggttggaaggccatatcc |
39239692 |
T |
|
| Q |
281 |
aagggcaaaaccaacattgtcttgtatgta |
310 |
Q |
| |
|
||| | |||||| ||||||||||||||| |
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|
| T |
39239693 |
aagttcccaaccaatattgtcttgtatgta |
39239722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 39194425 - 39194524
Alignment:
| Q |
139 |
tccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacac |
238 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| | ||||||||||| ||| || ||||| ||||||||||| ||||| | ||| ||||| | ||||||||| |
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|
| T |
39194425 |
tccactttctcatagctgccacaaagacttggagcattctagttatagggctgcctgagggcaatttatgcctatacaatggagttcctaccaaaaacac |
39194524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 39177558 - 39177737
Alignment:
| Q |
35 |
taacctcaatgaagaactgtgattaattctataccttccgttactagtatactcttcaatgctcacctcatgcagctcttttttatcatttgggacattt |
134 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| | || || |||| || ||| ||||| || |||| |||||||||||||||| ||| | |||||| | |
|
|
| T |
39177558 |
taacctcaatgaagtgctgcgatcaattctgtttctccccttacaagcataatcttccatactcaactcatgcagctcttttggatcttctgggacgcat |
39177657 |
T |
|
| Q |
135 |
aatttccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctata |
214 |
Q |
| |
|
|||||||||||| | || ||| ||| ||||||| | ||| ||||| ||||| |||||||| |||||||| || ||||| |
|
|
| T |
39177658 |
gatttccactttcgaaaagtagccacatagacttggagcatcctagtcaaagggcttcctgagggcaatttgtgcctata |
39177737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 39216124 - 39216199
Alignment:
| Q |
139 |
tccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctata |
214 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| | ||||||||| | ||| || ||||| ||||||||||| ||||| |
|
|
| T |
39216124 |
tccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctata |
39216199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 39257357 - 39257445
Alignment:
| Q |
138 |
ttccactttctcacagcagcaacaaagacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttcc |
226 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||| ||| || |||| ||| || ||||| || ||| |||| ||||||| ||| ||||| |
|
|
| T |
39257357 |
ttccattttctcatagcagccacaaagacttgaagcatccttgttatagggctgcctgagggaaatctatgcctataaaatggcgttcc |
39257445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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