View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0223_high_16 (Length: 461)
Name: NF0223_high_16
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0223_high_16
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 45362299 - 45362724
Alignment:
Q
29
atcaaattcaagacaaagattcttcaaacctcacaaattacaacaacaataaacagtaatcccagtccnnnnnnnntagtgtgaaagttctgtctgtagt
128
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
45362299
atcaaattcaagacaaagattcttcaaacctcacaaattacaacaacaataaacagtaatcccagtccaaaaaaaatagtgtgaaagttctgtctgtagt
45362398
T
Q
129
accaaaatctaatatctactgtgtctttcacttaggaattttaaattttattgaatctaaaccaaccacatcatattgcaaaagtaaagcttctttgtaa
228
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45362399
accaaaatctaatatctactgtgtctttcacttaggaattttaaattttattgaatctaaaccaaccacatcatattgcaaaagtaaagcttctttgtaa
45362498
T
Q
229
aataatgctgaaggaccggttcattcatgtggattatcaatgaccaaggatatttattgtttcagaaagcactttaataagtggaaacttttcatggaga
328
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45362499
aataatgctgaaggaccggttcattcatgtggattatcaatgaccaaggatatttattgtttcagaaagcactttaataagtggaaacttttcatggaga
45362598
T
Q
329
aaggtatgcacaattaatcctgctgtaaccagatagattgatcaacgtcatgtgcatggcaatgagacataaaggaaacatattaaaagaagggataagg
428
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
45362599
aaggtatgcacaattaatcctgctgtaaccagatagattgatcaacgtcatgtgcatggcaatgagacataaaggaaacatattaaaagaagggataagg
45362698
T
Q
429
gattaaagttcctcgaatctctgctc
454
Q
||||||||||||||||||||||||||
T
45362699
gattaaagttcctcgaatctctgctc
45362724
T
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Target Overview ] [
Alignment Overview ]
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