View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_high_33 (Length: 257)
Name: NF0223_high_33
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_high_33 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 830189 - 830427
Alignment:
| Q |
13 |
atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacaaattgacagagttagtaacttttaaaagttac |
112 |
Q |
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| T |
830189 |
atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacagattgacagagttagtaacttttaaaagttac |
830288 |
T |
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| Q |
113 |
ctgacgccagaaagagagaacattggatttaaccgcgcaaccagcaatgagatgga-catcatcataaaaaccagcgacaccgcagtaaattttaaacga |
211 |
Q |
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| T |
830289 |
ctgacgccagaaagagagaacattggatttaaccgcgcaacc-------aggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacga |
830381 |
T |
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| Q |
212 |
cggaatgtaaaaaagacgacgttcaagtgtattaacaacggattga |
257 |
Q |
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| T |
830382 |
cggaatgtaaaaaagacgacgttcaagtgtattaacaacggattga |
830427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 836247 - 836322
Alignment:
| Q |
70 |
tatagtatacaaattgacagagttagtaacttttaaaagttacctgacgccagaaagagagaacattggatttaac |
145 |
Q |
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| T |
836247 |
tatagtataaaaaattacaggtttagtaacttttaaaacttacctgacgccaaaaagagagaacattgtatttaac |
836322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 49234981 - 49235046
Alignment:
| Q |
173 |
atcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaag |
238 |
Q |
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| T |
49234981 |
atcataaaaaccagcaacaccgcgataaatcttaaacgaaggaatataaaacaaacggcgttcaag |
49235046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 50861689 - 50861624
Alignment:
| Q |
173 |
atcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaag |
238 |
Q |
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||||| ||||||||| ||||||| ||||| |||||||||||||| ||||| | ||| |||||||| |
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| T |
50861689 |
atcattaaaaccagcaacaccgcgataaatcttaaacgacggaatataaaacaaacggcgttcaag |
50861624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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