View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0223_high_35 (Length: 251)

Name: NF0223_high_35
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0223_high_35
NF0223_high_35
[»] chr3 (4 HSPs)
chr3 (13-251)||(830189-830427)
chr3 (70-249)||(836247-836426)
chr3 (138-232)||(49234952-49235046)
chr3 (111-216)||(49825694-49825799)
[»] chr1 (2 HSPs)
chr1 (111-232)||(50861624-50861745)
chr1 (150-181)||(47934430-47934461)
[»] chr7 (1 HSPs)
chr7 (138-238)||(941835-941935)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 830189 - 830427
Alignment:
Q  13 atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacaaattgacagagttagtaacttttaaaagttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  830189 atactcccaaagtgttggaaccaatcacatgcataatccattcactcaaaatcagagtatagtatacagattgacagagttagtaacttttaaaagttac 830288  T
Q  113 ctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830289 ctgacgccagaaagagagaacattggatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatg 830388  T
Q  213 taaaaaagacgacgttcaagtgtattaacaacggattga 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  830389 taaaaaagacgacgttcaagtgtattaacaacggattga 830427  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 836247 - 836426
Alignment:
Q  70 tatagtatacaaattgacagagttagtaacttttaaaagttacctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatc 169  Q
    ||||||||| ||| | ||||  |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| | |||||||| ||||||||    
T  836247 tatagtataaaaaattacaggtttagtaacttttaaaacttacctgacgccaaaaagagagaacattgtatttaacagcggagccaggaggtccataatc 836346  T
Q  170 ataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaagtgtattaacaacggatt 249  Q
    | ||||||| ||  | |||| |||||||| ||||||||   ||||||| | ||| |||| |||||| |||||||| ||||    
T  836347 aaaaaaaccggcttcgccgccgtaaatttgaaacgacgagttgtaaaagaaacggcgtttaagtgtgttaacaactgatt 836426  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 49234952 - 49235046
Alignment:
Q  138 gatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaag 232  Q
    |||||||| || |||||||||||||||||||||||||||||||| |||||||  ||||| |||||||| ||||| ||||| | ||| ||||||||    
T  49234952 gatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgataaatcttaaacgaaggaatataaaacaaacggcgttcaag 49235046  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 49825694 - 49825799
Alignment:
Q  111 acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaa 210  Q
    ||||||||||| || ||||| ||||| |||||||| || ||| |||||||||||||||||||||||||||| ||||| |  ||||| |||||| ||| ||    
T  49825694 acctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaactacgaaa 49825793  T
Q  211 tgtaaa 216  Q
    | ||||    
T  49825794 tataaa 49825799  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 50861745 - 50861624
Alignment:
Q  111 acctgacgccagaaagagagaacattggatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaa 210  Q
    ||||||||||| || ||||| || || |||||||| || |||||||||||||||||||||| ||||||||| |||||||  ||||| |||||||||||||    
T  50861745 acctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgataaatcttaaacgacggaa 50861646  T
Q  211 tgtaaaaaagacgacgttcaag 232  Q
    | ||||| | ||| ||||||||    
T  50861645 tataaaacaaacggcgttcaag 50861624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 181
Target Start/End: Complemental strand, 47934461 - 47934430
Alignment:
Q  150 caaccaggaggaccataatcataaaaaccagc 181  Q
    ||||||||||||||||||||||||||||||||    
T  47934461 caaccaggaggaccataatcataaaaaccagc 47934430  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 941835 - 941935
Alignment:
Q  138 gatttaaccgcgcaaccaggaggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaagtgtat 237  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||| |  ||||| |||||||| ||||| ||||| | ||| |||||||| ||||    
T  941835 gatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtat 941934  T
Q  238 t 238  Q
    |    
T  941935 t 941935  T

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