View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_high_4 (Length: 612)
Name: NF0223_high_4
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 29 - 559
Target Start/End: Complemental strand, 51858617 - 51858087
Alignment:
| Q |
29 |
acttaaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc |
128 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858617 |
acttaatggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc |
51858518 |
T |
|
| Q |
129 |
atcatcctctataatcgaattgttatatccaatattggaaacatagaattttccaacttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa |
228 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858517 |
atcatcctctaaaatcgaattgttatatccaatattggaaacacagaattttccatcttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa |
51858418 |
T |
|
| Q |
229 |
aacaacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaa |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51858417 |
aacaacactactttataaacaccattaaggggctcaaatgcaattaaaccacgcccatatctagaaaaactgagagtatgtgcttgaaacatttccttaa |
51858318 |
T |
|
| Q |
329 |
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagt |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858317 |
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagt |
51858218 |
T |
|
| Q |
429 |
tggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858217 |
tggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag |
51858118 |
T |
|
| Q |
529 |
cgccataaagcacagacactacggaatcgaa |
559 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
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|
| T |
51858117 |
cgccataaagcacaggcactacggaatcgaa |
51858087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 425
Target Start/End: Original strand, 34864872 - 34865268
Alignment:
| Q |
29 |
acttaaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||| |||||||||||||||||| | |
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|
| T |
34864872 |
acttaaaggatgaacaattgatccagaaaataattccacttttatccacaacataaacctttcccatataaaggattatgtcattatagattctattccc |
34864971 |
T |
|
| Q |
129 |
atcatcctctataatcgaattgttatatccaatattggaaacatagaattttccaacttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa |
228 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| ||| ||||| |||||| |||| |||||| ||||||| |||||| |
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| T |
34864972 |
atcatccactataatcaaattgttatatccaatattggacacacgcaattttccatcttgatgaagagcaaagaccatctgaccgggaccctcaacagaa |
34865071 |
T |
|
| Q |
229 |
aacaacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaa |
328 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||| ||| |||| |||||||||| ||| |||| ||||||||||| |||| ||| |
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| T |
34865072 |
aacaacactactttataaacatcagaaaggggctcaaatgcaattaaatcacctccatctctagaaaaattgatagtatatgcttgaaacaattccataa |
34865171 |
T |
|
| Q |
329 |
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| || ||| ||||||| | || |||||||||||||||||||| ||||||||| |
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|
| T |
34865172 |
ctcgtaagttcatgaaatctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga |
34865268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 561
Target Start/End: Original strand, 34865308 - 34865455
Alignment:
| Q |
426 |
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatga------------aaagga |
513 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||||| |||||||||||| || || |||| ||||| ||||| |||||| |
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|
| T |
34865308 |
agttggaaataatggttgtaggcgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggagaaggaaaagga |
34865407 |
T |
|
| Q |
514 |
ggggaaagaatagagcgccataaagcacagacactacggaatcgaaga |
561 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34865408 |
gggggaagaatagagcgcaataaagcacagacactacggaatcgaaga |
34865455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 34145737 - 34145598
Alignment:
| Q |
32 |
taaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctcatc |
131 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| | |||| | |||||||| |||||||||||| ||||||| ||||| ||| | |||||| |||| |
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|
| T |
34145737 |
taaaggatgaacaattaatccgaaaaataattccatttgtatccacaacataaaccttccccatatagaggattaaatcatcatatactctattaccatc |
34145638 |
T |
|
| Q |
132 |
atcctctataatcgaattgttatatccaatattggaaaca |
171 |
Q |
| |
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| |||| ||| ||||||||||||||| |||| ||||| |
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| T |
34145637 |
ccctactattatcaaattgttatatccaacattgcaaaca |
34145598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 34145460 - 34145347
Alignment:
| Q |
309 |
tgcttgaaacatttccttaactcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgat-tgttagtcaaaatatctaagtgacg |
407 |
Q |
| |
|
||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||||||| ||| ||| |||||||||| | |||||||||||| |
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|
| T |
34145460 |
tgcttgaaacaattctcttactcgcaagttcatgaaatctaacacgttgaatgggtatgtgtgtgttatg-gatgtgttagtcaagacatctaagtgacg |
34145362 |
T |
|
| Q |
408 |
aagtttgctagattt |
422 |
Q |
| |
|
|| ||| | |||||| |
|
|
| T |
34145361 |
aaattttccagattt |
34145347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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