View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_high_53 (Length: 204)
Name: NF0223_high_53
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 36346982 - 36347144
Alignment:
| Q |
22 |
agtatatacagagtctttccatgatggatgatgtagagagtccttaattaatttgtatatttatctgcgccgcagtttggtgtagcttgtactgtgtaag |
121 |
Q |
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| T |
36346982 |
agtatatacagagtctttccatgatggatgatgtagagagtccttaa----tttgtatatttatctgcgccgcagtttggggtagcttgtactgtgtaag |
36347077 |
T |
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| Q |
122 |
aaaattgaacattgttgcataaagccttagcaggttctccatcatatatcaagtctatgttcttcat |
188 |
Q |
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| T |
36347078 |
aaaattgaacattgttgcataaagccttagcaggttctccatcatatatcaagtctatgttcttcat |
36347144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 36353995 - 36354040
Alignment:
| Q |
116 |
tgtaagaaaattgaacattgttgcataaagccttagcaggttctcc |
161 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36353995 |
tgtaagacaattgaacattgttgcataaagccttagcaggttctcc |
36354040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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