View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_1 (Length: 876)
Name: NF0223_low_1
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 751; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 16 - 810
Target Start/End: Original strand, 40145071 - 40145865
Alignment:
| Q |
16 |
ccacaaaccctccggtgagatttctttcctcacaccaacatgcaacaaccctaccaagaaaataaccataagttgatcttcaattcatcgaccaaattat |
115 |
Q |
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| T |
40145071 |
ccacaaaccctccggtgagatttctttcctcacaccaacatgcaacaaccctaccaagaaaataaccacaagttgatcttcaattcatgtaccaaattat |
40145170 |
T |
|
| Q |
116 |
tgtctcgtgtcgtctgacatgtcgttccccaggagtgcctcaccctcatcgtcacaacccgttctccaatggcgtgtcctcggcctacaaatacaatgtc |
215 |
Q |
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| T |
40145171 |
tgtctcgtgtcgtctgacatgtagttcctcaggagtgcctcaccctcatcgtcacaactcgttctccaatggcgtgtcctcggcctacaaatacaatgtc |
40145270 |
T |
|
| Q |
216 |
aaatcgttaaaaatcaaaattcattgtggcaaatacgtcgtccagactcttttataccatttccttttttgattagccccacaaatacttggccttttgg |
315 |
Q |
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| T |
40145271 |
aaatcgttaaaaatcaaaattcattgtggcaaatacgtcgtccagactcttttataccatttccttttttgattagccccacaaatacttggccttttgg |
40145370 |
T |
|
| Q |
316 |
aatttcattttgagttctatgttatcagtgatcgttgtcaacctcaacatcatctactctgttccaccctacaaatgactcttatacatgggattttatt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
40145371 |
aatttcattttgagttctatgttatcagtgatcgttgtcaacctcaacatcatcttctctattccaccctacaaatgactcttatacatgtgattttata |
40145470 |
T |
|
| Q |
416 |
caagtcaaagaattggtctatatgttgggatttatggattcttcagcatcatcaaatggaaagagagtgtaaaacacagtatctagatactaatgcttca |
515 |
Q |
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| T |
40145471 |
caagtcaaagaattggtctatatgttgggatttatggattcttcagcatcatcaaatggaaagagagtgtaaaacacagtatctagatactaatgcttca |
40145570 |
T |
|
| Q |
516 |
agaagttatcgcaaagaaacacatttgtgatttgttctaggataatatacttcagaatccattgtaaacatcatcaaaaccttctacaacatgcaacgct |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40145571 |
agaagttatcgcaaagaaacacatttgtgatttgttctaggataatatacttcagaatccattgtaaacatcatcaaaaccttctacaacatgcaacgct |
40145670 |
T |
|
| Q |
616 |
gtccgcacaattttgaaaggcatgccaatttgattcggtatctgattgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtt |
715 |
Q |
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| T |
40145671 |
gtccgcacaattttgaaaggcatgccaatttgattcggtatctgattgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtt |
40145770 |
T |
|
| Q |
716 |
taggtgttgtttttaaaaacaatttatacacaacacacatattagatatataaaataagtttttaatctcattaattccttagtttgagtttctc |
810 |
Q |
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| T |
40145771 |
taggtgttgtttttaaaaacaatttatacacaacacacatattagatatataaaatatgtttttaatctcattaattccttagtttgagtttctc |
40145865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 833 - 874
Target Start/End: Original strand, 40145889 - 40145930
Alignment:
| Q |
833 |
ttgtgtaaccaaaagaactcactcgtcgtctctgctcctcca |
874 |
Q |
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|||||||||||||| |||||||||||||||||| || ||||| |
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| T |
40145889 |
ttgtgtaaccaaaataactcactcgtcgtctcttcttctcca |
40145930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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