View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_16 (Length: 476)
Name: NF0223_low_16
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 469
Target Start/End: Complemental strand, 46631383 - 46630947
Alignment:
| Q |
30 |
caatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaacacattacaaaattt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
46631383 |
caatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaacaaacacattgcaaaattt |
46631284 |
T |
|
| Q |
130 |
ccaacattgatccacttggacaacattttgatttattcaataaaatnnnnnnntaaccagagataaggaaattttggaaatcaaaacaaaccaannnnnn |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631283 |
ccaacattgatccacttggacaacattttgatttattcaataaaataaaaaaataaccagagataaggaaattttggaaatcaaaacaaaccaatttttt |
46631184 |
T |
|
| Q |
230 |
nngtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaaca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46631183 |
ttgtacagtatgtctattcatttggcagctttagaacacaatttgcaagtaaggcaagaggagcatcga---tacattcaaaaccaatttgtttacaaca |
46631087 |
T |
|
| Q |
330 |
gtcagaaactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46631086 |
gtcagaaactccatgatgacagatagcaggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
46630987 |
T |
|
| Q |
430 |
ccattaccacctccattcaaatgcttttcttcctatgcta |
469 |
Q |
| |
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| T |
46630986 |
cctttaccacctccattcaaatgcttttcttcctatgcta |
46630947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 461
Target Start/End: Original strand, 46172622 - 46172828
Alignment:
| Q |
254 |
gcagctttagaacacaatttgcaaggaaggcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagat |
353 |
Q |
| |
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||||| ||||||||||||||||||| ||||| ||| ||||||| | ||||||||| ||||||||||| ||| || | | || ||||||||||||||| |
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|
| T |
46172622 |
gcagccttagaacacaatttgcaagtcaggcaggagaagcatcggc---acattcaaagccaatttgtttccaaaag-ctggaattccatgatgacagat |
46172717 |
T |
|
| Q |
354 |
agc-aggtagcttaaaaaattacaacaattgacctctactctttaacttaaccaagtaacttgcaaatatgtagct---accattaccacctccattcaa |
449 |
Q |
| |
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|| || |||||||||| | || || ||||| ||||| |||||||||||||||||| ||||||||||| ||||| || | ||||| ||||| |||| |
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| T |
46172718 |
aggtagaaagcttaaaaa-taaccactattgatctctattctttaacttaaccaagtggcttgcaaatatttagctgacactactaccatctccaatcaa |
46172816 |
T |
|
| Q |
450 |
atgcttttcttc |
461 |
Q |
| |
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|||||||||||| |
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|
| T |
46172817 |
atgcttttcttc |
46172828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 46639558 - 46639471
Alignment:
| Q |
79 |
attcaaccaatattgtataaataaatggaaaaccaacacatta---caaaatttccaacattgatccacttggacaacattttgattt |
163 |
Q |
| |
|
|||||| |||| |||||||||| ||||||| |||||||||| | ||||||||| |||||| ||||||||||| |||||||||||| |
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|
| T |
46639558 |
attcaatcaatgttgtataaatgaatggaagaccaacacataaaaacaaaatttctaacattcttccacttggacgacattttgattt |
46639471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 46620503 - 46620454
Alignment:
| Q |
380 |
attgacctctactctttaacttaaccaagtaacttgcaaatatgtagcta |
429 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||| |||||| |
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|
| T |
46620503 |
attgacctctactctttaacttaaccaattggcttgcaaatatctagcta |
46620454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 183 - 461
Target Start/End: Original strand, 15767700 - 15767976
Alignment:
| Q |
183 |
taaccagagataaggaaattttggaaatcaaaacaaaccaannnnnnnngtacagtatgtctattcatttggcagctttagaacacaatttgcaaggaag |
282 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||| ||| |
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|
| T |
15767700 |
taaccagagaaaaggaaattttggaaatcaaaataaaccaaatttttttgtacagtatgtctagtcatttggcagccttagaactcaatttgcaagtaag |
15767799 |
T |
|
| Q |
283 |
gcaagaggagcatcgacgatacattcaaaaccaatttgtttacaacagtcagaaactccatgatgacagatag-caggtagcttaaaaaattacaacaat |
381 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| || || |
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|
| T |
15767800 |
gcaagagaagcattaa---tacattcaaaaccaatttgattacaaaagtcagaaactccatgatgacagataggcaggtaacttaaaaaattaccactat |
15767896 |
T |
|
| Q |
382 |
tgacctctactctttaacttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| || |||||| || ||| | ||||| ||||||| |||||||| |
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|
| T |
15767897 |
tgacctctactctttaacttaaccaagtagcttgaaaacatttagctaacactacgatctccaatcaaatgtttttcttc |
15767976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 15767578 - 15767683
Alignment:
| Q |
30 |
caatatccatttaacaaaagatagatgttccggtaccagtcaaaatataattcaaccaatattgtataaataaatggaaaaccaacacattacaaaattt |
129 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||||||||| |||||| || |||||||||| || ||||||||||||||| |||||| || |
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|
| T |
15767578 |
caatatccatttaacaaaagatagatattttggtacccgtcaaaatataactcaacctatgttgtataaatgaacggaaaaccaacacataacaaaactt |
15767677 |
T |
|
| Q |
130 |
ccaaca |
135 |
Q |
| |
|
|||||| |
|
|
| T |
15767678 |
ccaaca |
15767683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 461
Target Start/End: Original strand, 18373693 - 18373856
Alignment:
| Q |
302 |
tacattcaaaaccaatttgtttacaacagtcagaaactccatgatga---cagatag-caggtagcttaaaaaattacaacaattgacctctactcttta |
397 |
Q |
| |
|
||||||| |||||| ||||||| ||| |||| |||||||||||||| ||||||| || ||| ||||||| | | ||| |||||||||||||||||| |
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|
| T |
18373693 |
tacattctaaaccattttgtttccaaaggtcaaaaactccatgatgatgacagataggcatgtatcttaaaagaaaataactattgacctctactcttta |
18373792 |
T |
|
| Q |
398 |
acttaaccaagtaacttgcaaatatgtagctaccattaccacctccattcaaatgcttttcttc |
461 |
Q |
| |
|
|||||||||| | ||||||||||| |||||| || ||||| ||||||| ||||| |||||||| |
|
|
| T |
18373793 |
acttaaccaattggcttgcaaatatctagctaacactaccatctccattgaaatgtttttcttc |
18373856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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