View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_18 (Length: 461)
Name: NF0223_low_18
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 45362299 - 45362724
Alignment:
| Q |
29 |
atcaaattcaagacaaagattcttcaaacctcacaaattacaacaacaataaacagtaatcccagtccnnnnnnnntagtgtgaaagttctgtctgtagt |
128 |
Q |
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| T |
45362299 |
atcaaattcaagacaaagattcttcaaacctcacaaattacaacaacaataaacagtaatcccagtccaaaaaaaatagtgtgaaagttctgtctgtagt |
45362398 |
T |
|
| Q |
129 |
accaaaatctaatatctactgtgtctttcacttaggaattttaaattttattgaatctaaaccaaccacatcatattgcaaaagtaaagcttctttgtaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362399 |
accaaaatctaatatctactgtgtctttcacttaggaattttaaattttattgaatctaaaccaaccacatcatattgcaaaagtaaagcttctttgtaa |
45362498 |
T |
|
| Q |
229 |
aataatgctgaaggaccggttcattcatgtggattatcaatgaccaaggatatttattgtttcagaaagcactttaataagtggaaacttttcatggaga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362499 |
aataatgctgaaggaccggttcattcatgtggattatcaatgaccaaggatatttattgtttcagaaagcactttaataagtggaaacttttcatggaga |
45362598 |
T |
|
| Q |
329 |
aaggtatgcacaattaatcctgctgtaaccagatagattgatcaacgtcatgtgcatggcaatgagacataaaggaaacatattaaaagaagggataagg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362599 |
aaggtatgcacaattaatcctgctgtaaccagatagattgatcaacgtcatgtgcatggcaatgagacataaaggaaacatattaaaagaagggataagg |
45362698 |
T |
|
| Q |
429 |
gattaaagttcctcgaatctctgctc |
454 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
45362699 |
gattaaagttcctcgaatctctgctc |
45362724 |
T |
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