View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_low_19 (Length: 417)
Name: NF0223_low_19
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_19 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 399
Target Start/End: Complemental strand, 11196039 - 11195673
Alignment:
| Q |
30 |
agaaattccttggagttaataataaggttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11196039 |
agaaattccttggagttaataataaggttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagta |
11195940 |
T |
|
| Q |
130 |
caaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggatatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11195939 |
caaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggacatt |
11195840 |
T |
|
| Q |
230 |
agtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaag |
329 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| || |
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|
| T |
11195839 |
agtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgt---taacgtggttgcggaacaagaac |
11195743 |
T |
|
| Q |
330 |
actttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatga |
399 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||| |
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|
| T |
11195742 |
aatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatga |
11195673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 37 - 399
Target Start/End: Complemental strand, 11155585 - 11155226
Alignment:
| Q |
37 |
ccttggagttaataataaggttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagat |
136 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
11155585 |
ccttggagttaataagaaggttaaaataataagtgacaagggaaggttgtcaaaggaggatattgagaggaagatcaaagaagctgagaagtacaaagat |
11155486 |
T |
|
| Q |
137 |
gaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttga |
236 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11155485 |
gaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctataaatgataaggatattagtttga |
11155386 |
T |
|
| Q |
237 |
agctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||| ||||||||||| || | ||||| |
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|
| T |
11155385 |
tgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgt---taacgtgattgcggaacaagaacaatttga |
11155289 |
T |
|
| Q |
337 |
ttattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatga |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||| |
|
|
| T |
11155288 |
gtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatga |
11155226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 57 - 399
Target Start/End: Complemental strand, 11208666 - 11208327
Alignment:
| Q |
57 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
156 |
Q |
| |
|
|||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| ||| ||| |
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|
| T |
11208666 |
ttaaaatagtaaatgacaagggaagactgtcaaaggaggaaattgagaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaa |
11208567 |
T |
|
| Q |
157 |
gaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaag |
256 |
Q |
| |
|
|||| | ||| ||||| ||| | |||||||||| |||||||| |||||| || | ||||||||| || |||| | |||||||||||||||||||||| |
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|
| T |
11208566 |
gaaggttgaatcgagaaatgcactagagaagtacgcatacaatatgagggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaag |
11208467 |
T |
|
| Q |
257 |
gaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattcttt |
356 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| | |||||| || | |||||| ||| | ||||||||||| ||||| | ||||| ||||||||||| |
|
|
| T |
11208466 |
gaaaagatcaataacgcagttgatttggtcttcatgtggcttgacgctaataa---ggtagtagaacaacaagattttgagtgttataggagcattcttt |
11208370 |
T |
|
| Q |
357 |
caagtgtattcaatgcaattatggtgaagaaaataaaggatga |
399 |
Q |
| |
|
||||||| || || ||||||| |||||| ||||||||||| |
|
|
| T |
11208369 |
caagtgtgtttgatccaattattttgaagatgataaaggatga |
11208327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 57 - 363
Target Start/End: Complemental strand, 11275228 - 11274925
Alignment:
| Q |
57 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
156 |
Q |
| |
|
|||||||| ||| | | ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
11275228 |
ttaaaatagtaaataacaagggaagactgtcaaaagaggaaattgagaggatgatcaatgaagctgagaagtacaaagatgaagacattaggcataggaa |
11275129 |
T |
|
| Q |
157 |
gaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaag |
256 |
Q |
| |
|
||| | ||||||||| ||| | |||||||||| |||||||| |||||| || ||||||||| ||||||| | ||||||||| | |||||||||| |
|
|
| T |
11275128 |
aaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataaatgatcccgatattatctcgaagctttcattaaaagaaaag |
11275029 |
T |
|
| Q |
257 |
gaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattcttt |
356 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| | |||||| || |||||| |||||||| ||||||||||| ||||| | ||||| ||||||||||| |
|
|
| T |
11275028 |
gaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaat---gtggttgcagaacaacaagattttgaatgttataggagcattcttt |
11274932 |
T |
|
| Q |
357 |
caagtgt |
363 |
Q |
| |
|
||||||| |
|
|
| T |
11274931 |
caagtgt |
11274925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 57 - 363
Target Start/End: Complemental strand, 11169844 - 11169541
Alignment:
| Q |
57 |
ttaaaataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaa |
156 |
Q |
| |
|
|||||||| ||| ||| ||||||||| ||||| |||||||| |||| |||||||| | ||||||||| || |||||||||||||||| |||| ||| ||| |
|
|
| T |
11169844 |
ttaaaatagtaaatgacaagggaagactgtcacaggaggaagttgataggatgataagagaagctgacaaatacaaagatgaagacatgaggcataggaa |
11169745 |
T |
|
| Q |
157 |
gaagctagaagcgagagatgtattagagaagtatgcatacaacatga-ggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaa |
255 |
Q |
| |
|
|||| | ||||||||| ||| | |||||| ||| |||||||| |||| ||||| | ||||||||| ||||||||| | |||| |||||||||||||||| |
|
|
| T |
11169744 |
gaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc-ataaatgatccggatattagctcgaagatttcgtcaaaagaaaa |
11169646 |
T |
|
| Q |
256 |
ggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctt |
355 |
Q |
| |
|
|| ||| |||||||| |||| |||||||||||| | |||||| || |||||| |||||||| ||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
11169645 |
ggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaat---gtggttgcagaacaacaagattttgaacattatagtagcattctt |
11169549 |
T |
|
| Q |
356 |
tcaagtgt |
363 |
Q |
| |
|
|||||||| |
|
|
| T |
11169548 |
tcaagtgt |
11169541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 84 - 297
Target Start/End: Complemental strand, 11165590 - 11165377
Alignment:
| Q |
84 |
tgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattaga |
183 |
Q |
| |
|
|||||||||||||| |||| |||||||| | |||||||||||| |||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||| |
|
|
| T |
11165590 |
tgtcaaaggaggaagttgataggatgataagagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactaga |
11165491 |
T |
|
| Q |
184 |
gaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttg |
283 |
Q |
| |
|
|| ||| |||||||| |||||| || | ||||||||| ||| |||| | ||||||||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
11165490 |
gaggtacgcatacaatatgagggattccataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttg |
11165391 |
T |
|
| Q |
284 |
gtcttaaggtggct |
297 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
11165390 |
gtctttaagtggct |
11165377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 61 - 289
Target Start/End: Complemental strand, 11132279 - 11132051
Alignment:
| Q |
61 |
aataataagtgataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagacaagaggtatatgaagaag |
160 |
Q |
| |
|
||||| || ||| |||||||| ||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
11132279 |
aataagaaatgacaagggaaggctgtcaaaagaagagattgagaggatgatcgaagaagctgagaagtacaaggatgaagacaagatgtataggaagaag |
11132180 |
T |
|
| Q |
161 |
ctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaa |
260 |
Q |
| |
|
||||| | ||| ||| ||| ||||||| |||||| |||||||||||||| ||||| |||||||| |||| |||||||||||| | |||| |||||| |
|
|
| T |
11132179 |
gtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccataaacgataaggagattatgatgaagctttcgttagaagacaaggaag |
11132080 |
T |
|
| Q |
261 |
agatcaataaagcaattgatttggtctta |
289 |
Q |
| |
|
|||| |||| ||||||||| ||||||| |
|
|
| T |
11132079 |
tgatcgataacacaattgattcggtctta |
11132051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 183 - 363
Target Start/End: Original strand, 11242021 - 11242199
Alignment:
| Q |
183 |
agaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaa--agaaaaggaaaagatcaataaagcaattgat |
280 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| | | ||||||||||| ||| | ||||||||||||| |||||||||||| || |
|
|
| T |
11242021 |
agaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-at |
11242119 |
T |
|
| Q |
281 |
ttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgt |
363 |
Q |
| |
|
|||||||| | ||||| ||||||||| ||||||| ||||||| ||| ||||| | ||||| |||||||||||||||||| |
|
|
| T |
11242120 |
ttggtcttcacatggcttgatgttaat---gtggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgt |
11242199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 11315745 - 11315841
Alignment:
| Q |
187 |
gtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttg |
283 |
Q |
| |
|
|||||||||||| |||| | |||| || ||||||||||||||||| || | ||||| ||||||||||||| ||||||||||| | ||||||| |||| |
|
|
| T |
11315745 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaatgatgcaattggtttg |
11315841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 11315627 - 11315674
Alignment:
| Q |
93 |
aggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaag |
140 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
11315627 |
aggaaattgagaggaagatcaacgaagctgagaagtacaaagacgaag |
11315674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 11319880 - 11319925
Alignment:
| Q |
95 |
gaaattgagaggatgatcaaagaagc--tgagaagtacaaagatga |
138 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11319880 |
gaaattgagaggatgatcaaagaagccgagagaagtacaaagatga |
11319925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 8601249 - 8601180
Alignment:
| Q |
74 |
aagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaaagatgaagaca |
143 |
Q |
| |
|
||||||||| | |||| || ||||||||||| |||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
8601249 |
aagggaagactatcaaccgaagaaattgagagaatgatccaagaagctgagaatttcaaagatgaagaca |
8601180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 8101939 - 8101878
Alignment:
| Q |
71 |
gataagggaagattgtcaaaggaggaaattgagaggatgatcaaagaagctgagaagtacaa |
132 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||| |||| || ||||||| ||||| ||||| |
|
|
| T |
8101939 |
gataagggaaggttgtcaaaggaagaaatcgagaagatggtccaagaagcagagaaatacaa |
8101878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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