View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_low_2 (Length: 687)
Name: NF0223_low_2
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 30 - 677
Target Start/End: Original strand, 15845879 - 15846526
Alignment:
| Q |
30 |
gtatattgtactagttagatattaagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtattatctcat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15845879 |
gtatattgtactagttagatattaagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtattatctcat |
15845978 |
T |
|
| Q |
130 |
tgtgaatatgaatgaaaaataatatgctaaagattaatagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15845979 |
tgtgaatatgaatgaaaaataatatgctaaagattaatagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttc |
15846078 |
T |
|
| Q |
230 |
tttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacat |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846079 |
tttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacat |
15846178 |
T |
|
| Q |
330 |
caagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaa |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15846179 |
caagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtataaa |
15846278 |
T |
|
| Q |
430 |
gtaaatcatattataagacgaaaaattagaaattcaattacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgc |
529 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846279 |
gtaaatcatattataagaagaaaatttagaaattcaattacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgc |
15846378 |
T |
|
| Q |
530 |
cggattgactatctttcgatgtttagcccatttctcaccctcttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttggga |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
15846379 |
cggattgactatctttcgatgtttagcccatttctcaccctcttggtgtgctataccaacaccgaaatacttggaaatggagatgaactttgatttgggg |
15846478 |
T |
|
| Q |
630 |
aagtcctccatcctgttaaagatttccttaatttgatcagggtctgtg |
677 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846479 |
aagtcctccatcctgttaaagatttccttaatttgatcagggtctgtg |
15846526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 178 - 677
Target Start/End: Original strand, 15852855 - 15853354
Alignment:
| Q |
178 |
ccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagctgcttccaaat |
277 |
Q |
| |
|
|||||||||| ||||||| || || || ||||||||| || |||||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
15852855 |
ccataatggagtgttcgtttgtagttctttcatcaaaagaactccctgcttcttcaaaagttgaaatagttttgttccttctgcgtagctgcttccaaat |
15852954 |
T |
|
| Q |
278 |
gctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttccatttgctta |
377 |
Q |
| |
|
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
15852955 |
gctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatctcacatgttccatctgatgacaataaaccattccatttgctta |
15853054 |
T |
|
| Q |
378 |
tcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa-ttacaaaatt |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| || ||||||| |
|
|
| T |
15853055 |
tcatttcattgcaactgtgagaaaatgcaggcagcataccctatagtatgaagtaaatcatataataagaagaaaagttagaaattcaatttgcaaaatt |
15853154 |
T |
|
| Q |
477 |
gaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctcaccctcttggt |
576 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
15853155 |
gaaataattagcta-agtaataaccttactttcaatttttctatatggaatgccggattgactatctttcgatgtgtagcccatttctcaccctcatggt |
15853253 |
T |
|
| Q |
577 |
gtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttgatcagggtctgt |
676 |
Q |
| |
|
|| |||||||||||| |||||| || ||||| ||| |||||| |||||| |||||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15853254 |
gtactataccaacactcaaatacaaggcaatgggtcttaacttttgtttggggaagtcctcagtcttgttaaagacatccttaatttgatcagggtctgt |
15853353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 172 - 677
Target Start/End: Original strand, 15860210 - 15860716
Alignment:
| Q |
172 |
ataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagctgctt |
271 |
Q |
| |
|
||||| |||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
15860210 |
atacccccataatggattgttcgtgtgtcgccctgtcatcaaaagaaatccctgcttctttagaagttgaaatagttttgttccttctgcgtagctgctt |
15860309 |
T |
|
| Q |
272 |
ccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttccatt |
371 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15860310 |
ccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaatctcacatgttccatctgatgacaataatcccttccatt |
15860409 |
T |
|
| Q |
372 |
tgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa-ttac |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
15860410 |
tgcttatcatttcattgcaactgtgagaaaatgcaggcagcataacctatagtttgaagtaaatcatattataagaataaaaattagaaatttaatttac |
15860509 |
T |
|
| Q |
471 |
aaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctcaccct |
570 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||||||||||| ||||||||| |||||| | ||||| | ||||||||||||||||| ||||| |
|
|
| T |
15860510 |
aaaattgcaagaattaattaaagcaataaccttactttcaatttttctaggtggaatgctggattggcgatcttcctatgtttagcccatttcttaccct |
15860609 |
T |
|
| Q |
571 |
cttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttgatcagg |
670 |
Q |
| |
|
| || | | ||||||||| |||||||||| |||||||| | ||| |||||| ||||| || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
15860610 |
catgatctagtataccaacgttcaaatacttggcgatggatcttagttttggtttggggaagtcatcaatcttgttaaagacatccttaatttgatcagg |
15860709 |
T |
|
| Q |
671 |
gtctgtg |
677 |
Q |
| |
|
||||||| |
|
|
| T |
15860710 |
gtctgtg |
15860716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 167 - 675
Target Start/End: Original strand, 15866592 - 15867100
Alignment:
| Q |
167 |
tagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagc |
266 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| || | |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
15866592 |
tagtcatacccccataatggattgttcgtttgtcgccctgtcatcaaaagaaatccctgcttctttagaagttgaaatagtttttctccttctgcgtagc |
15866691 |
T |
|
| Q |
267 |
tgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatccctt |
366 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
|
|
| T |
15866692 |
tgcttccaaatgccgtccgagaaattacatcacaggtaaaattctgaaggaaaggccaaacatcaacctcacatgttccatctgatgacaatagttcctt |
15866791 |
T |
|
| Q |
367 |
ccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa |
466 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
15866792 |
ccatttactaatcatttcattgcaactgtaagaaaatgcaggtagcataccctatagtttgaagtaaatcatattataagaataaaaattagaaatttaa |
15866891 |
T |
|
| Q |
467 |
-ttacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctc |
565 |
Q |
| |
|
|| |||||||| || ||||| || |||||||||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||| |
|
|
| T |
15866892 |
tttgcaaaattgcaagaatta-ttaaagcaataaccttactttcaatttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttctt |
15866990 |
T |
|
| Q |
566 |
accctcttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttga |
665 |
Q |
| |
|
|||||| | ||| ||||||||| | |||||||||| |||||| | || || |||||| |||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
15866991 |
accctcataatgtattataccaacgctcaaatacttggcgatggattttaatattggtttggggaagtcctcgatcttgttaaagacttccttaatttga |
15867090 |
T |
|
| Q |
666 |
tcagggtctg |
675 |
Q |
| |
|
|||||||||| |
|
|
| T |
15867091 |
tcagggtctg |
15867100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 393
Target Start/End: Complemental strand, 30483007 - 30482838
Alignment:
| Q |
224 |
tgcttctttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggcc |
323 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||| |||| || |||||||||||||||| || ||| ||||||| | |||||| |||| | |||||| |
|
|
| T |
30483007 |
tgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcc |
30482908 |
T |
|
| Q |
324 |
aaacatcaagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
393 |
Q |
| |
|
| ||||||| ||||||| ||||||| |||| || | ||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
30482907 |
atacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaact |
30482838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 30475394 - 30475271
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || ||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||| | |
|
|
| T |
30475394 |
gaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttgaaggaaaggccaaacatccaa |
30475295 |
T |
|
| Q |
334 |
ctcacatgttccatctgatgacaa |
357 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
30475294 |
ttcacatgatccatctgatgacaa |
30475271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 30394229 - 30394070
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||||||| |||| || |||||||| || |||| |||||| |||||| | ||||||||| ||| ||||||| || || | |
|
|
| T |
30394229 |
gaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcacttgccaaattctgcagggaaggccatacgtctat |
30394130 |
T |
|
| Q |
334 |
ctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
393 |
Q |
| |
|
||||||| ||||||||| ||||| | | ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
30394129 |
ttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaact |
30394070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 30384100 - 30383941
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| ||||||||||| |||| |||||| |||||| | |||||| || ||| ||||||| | ||| | |
|
|
| T |
30384100 |
gaagttgaaatattctttttccttcttcatagctacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctat |
30384001 |
T |
|
| Q |
334 |
ctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
393 |
Q |
| |
|
||||||| ||||||||| ||||| | | || ||||||| | |||| ||||||||||| |
|
|
| T |
30384000 |
ttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaact |
30383941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 30436523 - 30436400
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || |||||||| |||| || |||||| | ||||| || |||||| |||||||||||||| || || | |
|
|
| T |
30436523 |
gaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttgaaggaaaggccatacgtccat |
30436424 |
T |
|
| Q |
334 |
ctcacatgttccatctgatgacaa |
357 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
30436423 |
ttcacatgatccatctgacgacaa |
30436400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 30468265 - 30468142
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || |||||||| |||| || |||||| ||||||| || ||||| |||||||||||||| || || | |
|
|
| T |
30468265 |
gaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttgaaggaaaggccatacgtccat |
30468166 |
T |
|
| Q |
334 |
ctcacatgttccatctgatgacaa |
357 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
30468165 |
ttcacatgatccatctgacgacaa |
30468142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 30424272 - 30424155
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || ||||||||||| | || |||||| ||||||| | |||||| |||||||||||||| || || | |
|
|
| T |
30424272 |
gaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtccat |
30424173 |
T |
|
| Q |
334 |
ctcacatgttccatctga |
351 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
30424172 |
ttcacatgatccatctga |
30424155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 46830919 - 46830989
Alignment:
| Q |
52 |
taagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtatt |
122 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| |
|
|
| T |
46830919 |
taagtagttattgtataactgttgtagttatcttattgtgtgtatgtattattatatataatgattgtatt |
46830989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 41628343 - 41628459
Alignment:
| Q |
234 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
333 |
Q |
| |
|
|||||||||||||| || ||||||| |||| || ||||| |||| ||||| |||||| ||||||| | ||||||||||||| ||||||| | ||| | |
|
|
| T |
41628343 |
gaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatatctat |
41628442 |
T |
|
| Q |
334 |
ctcacatgttccatctg |
350 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
41628443 |
ttcacatgatccatctg |
41628459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2309 times since January 2019
Visitors: 2400