View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_20 (Length: 411)
Name: NF0223_low_20
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 7577847 - 7578220
Alignment:
| Q |
29 |
aactttgcactccacatttaatatttcatatttagattttcttaatgtatgtactggattcaagacttcaagtaaatggatgcctattaaatatggttat |
128 |
Q |
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| T |
7577847 |
aactttgcactccacatttaacatttcatatttagattttcttgatgtatgtactggattcaagacttcaagtaaatggatgcctattaaatatggttat |
7577946 |
T |
|
| Q |
129 |
tggatatgaaagacgcagtctacattgtcatgagttcaggtacaagtcttaatcatgaatgtggatgcaggcatgaacactcaagttacaggtatcctag |
228 |
Q |
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| T |
7577947 |
tggatatgaaagacgcagtctacattgtcatgagttcaggtacaagtcttaatcatgaatgtggatgcaggcatgaacactcaagttacaagtatcctag |
7578046 |
T |
|
| Q |
229 |
acgaacctaaccaactacttttccttataaacaaaattctgcatgaaaattatatagcaaggtaactaaagaaactcaaaaatgaagaacactgcattat |
328 |
Q |
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| T |
7578047 |
acgaacctaaccaactacttttccttataaacaaaattctgcatgaaaattatatagcaaggtaactaaagaaactcaaaaatgaagaacactgcattat |
7578146 |
T |
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| Q |
329 |
ttagagagcacagatcaccggatgtgaatggtctaatttgaacc---aagaccttcttttttgtgttcactctc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
7578147 |
ttagagagcacagatcaccggatgtgaatggtctaatttgaaccaagaagacctacttttttgtgttaactctc |
7578220 |
T |
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