View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_21 (Length: 411)
Name: NF0223_low_21
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 5161640 - 5161230
Alignment:
| Q |
1 |
caacaaagataatccattcccaataggtagaagcaaaaagcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttacca |
100 |
Q |
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| T |
5161640 |
caacaaagataatccattcccaataggtagaagcaaaaagcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttacca |
5161541 |
T |
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| Q |
101 |
aaagcacatatctggaggaacaaaatttccaaactatagaaagtaaaagtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcg |
200 |
Q |
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| T |
5161540 |
aaagcacatatctggatgaacaaaatttccaaactatagaaagtaaaagtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcg |
5161441 |
T |
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| Q |
201 |
cacggcatgggagtgagcttatgctatatccgtccctcaactcattcctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaaga |
300 |
Q |
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| T |
5161440 |
cacggcatgggagtgagcttatgctatatccgtccctcaactcattcctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaaga |
5161341 |
T |
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| Q |
301 |
gccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcggga |
400 |
Q |
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| T |
5161340 |
gccgagaggagggacagacagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcacttaagttcctgtaaatcatcttcggga |
5161241 |
T |
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| Q |
401 |
caagggacaaa |
411 |
Q |
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| T |
5161240 |
caaggtacaaa |
5161230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 5158380 - 5158291
Alignment:
| Q |
318 |
acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaaggga |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5158380 |
acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaaggga |
5158291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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