View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0223_low_23 (Length: 375)

Name: NF0223_low_23
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0223_low_23
NF0223_low_23
[»] chr4 (5 HSPs)
chr4 (34-364)||(10186136-10186472)
chr4 (244-362)||(28931499-28931616)
chr4 (164-212)||(13298523-13298571)
chr4 (165-212)||(20709976-20710023)
chr4 (164-212)||(32427131-32427179)
[»] chr8 (3 HSPs)
chr8 (164-210)||(45371117-45371163)
chr8 (164-212)||(24855548-24855596)
chr8 (168-212)||(2701665-2701709)
[»] chr3 (2 HSPs)
chr3 (164-202)||(50402672-50402710)
chr3 (174-218)||(16108815-16108859)
[»] chr5 (2 HSPs)
chr5 (164-229)||(34114344-34114409)
chr5 (164-208)||(20981268-20981312)
[»] chr6 (3 HSPs)
chr6 (165-213)||(4886203-4886251)
chr6 (164-218)||(24769297-24769351)
chr6 (164-212)||(24780396-24780444)
[»] chr2 (3 HSPs)
chr2 (160-212)||(41947129-41947180)
chr2 (164-212)||(33623693-33623741)
chr2 (164-212)||(39597571-39597619)
[»] chr7 (4 HSPs)
chr7 (164-207)||(21450974-21451017)
chr7 (164-207)||(39417761-39417804)
chr7 (172-213)||(2183695-2183735)
chr7 (164-213)||(38774339-38774388)
[»] chr1 (2 HSPs)
chr1 (164-207)||(3950672-3950715)
chr1 (181-213)||(13827208-13827240)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 34 - 364
Target Start/End: Original strand, 10186136 - 10186472
Alignment:
Q  34 tcacgaattaaataagtctattaatatatttagttttgaaattttgttaggtttagtgtaacc----catatatatgatgacacataaggtatatagtgt 129  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    || |||||||||||||||||||||||||||||     
T  10186136 tcacgaattaaataagtctattaatatatttagcttagaaattttgttaggtttagtgtaacctgcccacatatatgatgacacataaggtatatagtgg 10186235  T
Q  130 tatagtgctgccatagctgctatttgaactactctactaaatagcatattgcggaacaatagtgatttcttcaaattccgctatccta---tgctgttat 226  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  10186236 tatagtgctgccatagctgctatttgaactactttactaaatagcatattgcggaacaatagtgatttcttcaaattccgctatcctatagtgctgttat 10186335  T
Q  227 agctgttatttgacaagaaatgaacgaatagatctaaaatttcatgcttggacataaaaaagcctgccctgttgattatttcctagctttttcgttcctc 326  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10186336 agctgttatttgacaacaaatgaacgaatagatctaaaatttcatgcttggacataaaaaagcctgccctgttgattatttcctagc-ttttcgttcctc 10186434  T
Q  327 ccacttatatattttatcgtctgctctgtctgattcat 364  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10186435 ccacttatatattttatcatctgctctgtctgattcat 10186472  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 362
Target Start/End: Original strand, 28931499 - 28931616
Alignment:
Q  244 aaatgaacgaatagatctaaaatttcatgcttggacataaaaaagcctgccctgttgattatttcctagctttttcgttcctcccacttatatattttat 343  Q
    ||||||| ||||||||||||  |||||||||  ||||| ||||||| ||| |||||| || |||| |||  ||||| |||||| |||||||| |||||||    
T  28931499 aaatgaaggaatagatctaacctttcatgctcagacatgaaaaagcttgctctgttgtttttttcttag-gttttctttcctctcacttatagattttat 28931597  T
Q  344 cgtctgctctgtctgattc 362  Q
     ||||||| ||| ||||||    
T  28931598 tgtctgctatgtttgattc 28931616  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 13298571 - 13298523
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    |||||||||||||||  | ||||||||||||||| ||||||||||||||    
T  13298571 tactaaatagcatatcacagaacaatagtgatttgttcaaattccgcta 13298523  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 20709976 - 20710023
Alignment:
Q  165 actaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||||||    
T  20709976 actaaatagcgtattgcagaacaatagcgatttgttcaaattccgcta 20710023  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 32427131 - 32427179
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    |||||| |||||||||||||||||||| || ||| ||||||||| ||||    
T  32427131 tactaattagcatattgcggaacaataatggtttgttcaaattctgcta 32427179  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 45371117 - 45371163
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgc 210  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||    
T  45371117 tactaaatagcatattgcggaacaatagtggtttgtccaaattccgc 45371163  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 24855548 - 24855596
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    |||||||||| ||| ||| ||||||||||||||| ||||||||||||||    
T  24855548 tactaaatagtatactgcagaacaatagtgatttgttcaaattccgcta 24855596  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 2701709 - 2701665
Alignment:
Q  168 aaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||    
T  2701709 aaatagcatattgcggaacattagcgatttgttcatattccgcta 2701665  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 50402672 - 50402710
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttca 202  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  50402672 tactaaatagcatattgcggaacaatagtgatttgttca 50402710  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 16108859 - 16108815
Alignment:
Q  174 catattgcggaacaatagtgatttcttcaaattccgctatcctat 218  Q
    ||||||||||||| |||| ||||| ||||||||||||||| ||||    
T  16108859 catattgcggaactatagcgattttttcaaattccgctatgctat 16108815  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 34114409 - 34114344
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgctatcctatgctgttatagc 229  Q
    ||||||||||| ||||| |||||||||| ||||| ||||| ||| ||||||||||| || ||||||    
T  34114409 tactaaatagcgtattgtggaacaatagcgatttgttcaagttctgctatcctatggtgctatagc 34114344  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 20981312 - 20981268
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattcc 208  Q
    ||||||||||| |||||| ||||||||||||||  ||||||||||    
T  20981312 tactaaatagcgtattgcagaacaatagtgattagttcaaattcc 20981268  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 4886251 - 4886203
Alignment:
Q  165 actaaatagcatattgcggaacaatagtgatttcttcaaattccgctat 213  Q
    |||||||||||||| |||||||||||| ||||| |||||||||| ||||    
T  4886251 actaaatagcatatcgcggaacaatagagatttgttcaaattccactat 4886203  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 24769351 - 24769297
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgctatcctat 218  Q
    ||||||||||  |||||| |||||||| |||||| ||||||||||||||| ||||    
T  24769351 tactaaatagtgtattgcagaacaataatgatttgttcaaattccgctatactat 24769297  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 24780444 - 24780396
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    ||||| ||||| ||||||||||||| | |||||| ||||||||||||||    
T  24780444 tactacatagcttattgcggaacaacaatgatttgttcaaattccgcta 24780396  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 41947129 - 41947180
Alignment:
Q  160 actctactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    ||||||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  41947129 actctactaaatagcgtattgcggaacaa-agcgatttgttcaaattccgcta 41947180  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 33623693 - 33623741
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    ||||||||||||||| | |||||||||||||||| || |||||| ||||    
T  33623693 tactaaatagcatatagtggaacaatagtgatttgttaaaattctgcta 33623741  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 39597619 - 39597571
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgcta 212  Q
    ||||||||||| ||| |||||||||||| ||||| || |||||||||||    
T  39597619 tactaaatagcgtatcgcggaacaatagcgatttatttaaattccgcta 39597571  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 21450974 - 21451017
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattc 207  Q
    |||||||||||||||| | ||||||||||||||| |||||||||    
T  21450974 tactaaatagcatattccagaacaatagtgatttgttcaaattc 21451017  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 39417804 - 39417761
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattc 207  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||    
T  39417804 tactatatagcatatcgcggaacaatagtgatttgttcaaattc 39417761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 2183695 - 2183735
Alignment:
Q  172 agcatattgcggaacaatagtgatttcttcaaattccgctat 213  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  2183695 agcatattgcggaacaa-agtgatttgttcaaattccgctat 2183735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 38774339 - 38774388
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattccgctat 213  Q
    ||||||||||||||  || ||||||||||||||| ||||||||| |||||    
T  38774339 tactaaatagcataacgctgaacaatagtgatttgttcaaattctgctat 38774388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 3950715 - 3950672
Alignment:
Q  164 tactaaatagcatattgcggaacaatagtgatttcttcaaattc 207  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||    
T  3950715 tactaaatagcgtatcgcggaacaatagtgatttgttcaaattc 3950672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 13827208 - 13827240
Alignment:
Q  181 cggaacaatagtgatttcttcaaattccgctat 213  Q
    ||||||||||||||||| |||||||||||||||    
T  13827208 cggaacaatagtgatttgttcaaattccgctat 13827240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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