View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_27 (Length: 355)
Name: NF0223_low_27
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 41709346 - 41709018
Alignment:
| Q |
1 |
tgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaataaacaagccaccttaaagtgtctataca |
100 |
Q |
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| T |
41709346 |
tgggtgctgtcaaaatgttgacaagtgaactaagtttaataatagtggtagtacttgtcagtttttcttaatacacaagccaccttaaagtgtctataca |
41709247 |
T |
|
| Q |
101 |
ctctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaactgtgttgcattttaag |
200 |
Q |
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| T |
41709246 |
ctctcaatttctaagcacattgcagcctgtgttataagaaacatggggcataactattgaagaaaacaataatctgctttaaattgtgttgcattttaag |
41709147 |
T |
|
| Q |
201 |
ctatctccagaatcttctgctcctgcagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacatc |
300 |
Q |
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| T |
41709146 |
ctatctcca----------------cagaagaaattaactttgaggaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacatc |
41709063 |
T |
|
| Q |
301 |
actggaaatttatcattgcgaatattatttaaaacgccatctgtg |
345 |
Q |
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| T |
41709062 |
actggaaatttatcattgcgaatattatttaaaacgccatctgtg |
41709018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 14112421 - 14112498
Alignment:
| Q |
265 |
atcattgcatctgtctcagtcatattgaattacatcactggaaatttatcattgcgaatattatttaaaacgccatct |
342 |
Q |
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| T |
14112421 |
atcattgcatctgtcttagtcatattgaattacatcactggaaatttatcattgcgaatactatttaaaacgcaatct |
14112498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 14111755 - 14111806
Alignment:
| Q |
187 |
tgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaa |
238 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||||| |||| |
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| T |
14111755 |
tgttgcattttaagctatctccataatcttttgctcctccagaagaagttaa |
14111806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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