View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_29 (Length: 337)
Name: NF0223_low_29
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 118 - 322
Target Start/End: Complemental strand, 44998615 - 44998411
Alignment:
| Q |
118 |
ggctttgtcacaatgaatggatgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcac |
217 |
Q |
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| T |
44998615 |
ggctctgtcacaatgaatggatgttctctttgtctctcaccgccaccactgatgttatcttcttcctcctcgtctccttcttcattctcaccatgatcac |
44998516 |
T |
|
| Q |
218 |
catttcccttcatcttcatccttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44998515 |
catttcccttcatcttcatccttctcctccttatttgctgcctctttctcctctcctccaccacagctacctcccaagtactccctcctccgcttcccac |
44998416 |
T |
|
| Q |
318 |
cgcct |
322 |
Q |
| |
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||||| |
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| T |
44998415 |
cgcct |
44998411 |
T |
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