View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_low_3 (Length: 660)
Name: NF0223_low_3
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 16 - 631
Target Start/End: Complemental strand, 4480524 - 4479910
Alignment:
| Q |
16 |
agagtagtgcacaagtggttgagagggcgtgacatctaattgaggactggcatgaagccaatctgccaagccaaactgcgcctctgcaggaggccgcaca |
115 |
Q |
| |
|
||||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
4480524 |
agagtagtgaacaagtcgttgagagggcgcgacatctaattgaggactggcaggaagccaatctgccaagccaaactgcgcctctgcaggaggccacgca |
4480425 |
T |
|
| Q |
116 |
gcagcaggctgctaacacattgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttc |
215 |
Q |
| |
|
||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4480424 |
gcaacaggctgctaacacattgcaacatagtgtgcggccccaaaattccccaactggacctgctgtcccacaatggtttcctcctagtagggg-aggttc |
4480326 |
T |
|
| Q |
216 |
aaatgcaatattgacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtga |
315 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4480325 |
aaatgcaatattaacgcggctttctctaaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttagctaaagtga |
4480226 |
T |
|
| Q |
316 |
tgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagattt |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4480225 |
tgccttttgatcaagtttatccggtagctgttggcgatgctttgggtctttatcatgccattcaacggatgcaagacatgcaattcgacaacatagattt |
4480126 |
T |
|
| Q |
416 |
cgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttcc |
515 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4480125 |
cgagcttgattctaaaataatgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaatttctc |
4480026 |
T |
|
| Q |
516 |
ccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccacta |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4480025 |
ccttccttcacaaactctagggtcgagtttattaggcgacaaacgaatatggcagctcatgccttagcaagagaagtcatttccttagctagtcccacta |
4479926 |
T |
|
| Q |
616 |
tttattatgcaatccc |
631 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
4479925 |
tttattatacaatccc |
4479910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 256 - 631
Target Start/End: Original strand, 14485272 - 14485647
Alignment:
| Q |
256 |
ggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaac |
355 |
Q |
| |
|
||||||||||| | ||||| | || ||||||||| |||||||||| |||| |||||| ||| ||||||||| | | ||| |||||| | || ||| | |
|
|
| T |
14485272 |
ggacaggtatcggcgtgtgtatacgtgatgattcttgaacttttgtgctagcaaaagtgttgcaatttgatcaattatttcctgtagctatcggtgaagc |
14485371 |
T |
|
| Q |
356 |
tttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcc |
455 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| ||| | || || || ||||| || || |||||||| ||||| || |||||||||| ||||| |
|
|
| T |
14485372 |
gttgggtctatatcatgctatgcaatggatgcaagatatgtattttgataatatagactttgaacttgattcaaaaatcactcgagatgctttttactcc |
14485471 |
T |
|
| Q |
456 |
cgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgac |
555 |
Q |
| |
|
|||| ||| || | ||||||||||| ||||||||||| | ||| |||||| |||||| | ||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
14485472 |
cgtacgatcgacgttacagaatttggaaatattattgacgcgtgccgagagattttttccacctcctttacaaactcccaggtagagtttattaggcgac |
14485571 |
T |
|
| Q |
556 |
aagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||| | | ||||||| ||||||||||||| || |||| |||||||||| | |||||||||||||||||| |
|
|
| T |
14485572 |
aagcgaatgcggcggctcatgttttagcaagagaagccacttccctagctagtccaattatttattatgcaatccc |
14485647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 405 - 632
Target Start/End: Complemental strand, 16878233 - 16878006
Alignment:
| Q |
405 |
aacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgag |
504 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| | || ||| | |||||||||| | ||||||||||| |||||||| |
|
|
| T |
16878233 |
aacatcgattttgagcttgattccaaaatcacgagagatgcattccattcccgcaagacggatgtttcagaatttggtagtattattgatgcgtgtcgag |
16878134 |
T |
|
| Q |
505 |
agcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagc |
604 |
Q |
| |
|
| || ||| | || || ||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
16878133 |
atttgttctccacatcttttacaaactctagggtcgagtttatccggcaacaagcgaatgcggcagctcatgccttagcaagagaagccacttccttagc |
16878034 |
T |
|
| Q |
605 |
tagtcccactatttattatgcaatccct |
632 |
Q |
| |
|
||||||| ||||||||||| ||||||| |
|
|
| T |
16878033 |
tagtccccatatttattatgaaatccct |
16878006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 271 - 624
Target Start/End: Original strand, 42625788 - 42626141
Alignment:
| Q |
271 |
tgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatca |
370 |
Q |
| |
|
||||| |||||||||||| |||| ||||| ||||||||||| ||| |||||| |||| | ||| ||||| || || ||| | |||||| | ||| | |
|
|
| T |
42625788 |
tgtgtattcgggatgatttcggaacctttgtgctagctaaagtgctgcaatttgattaagtatttcccgtagcagtcggtgaagcgttgggtttgtatta |
42625887 |
T |
|
| Q |
371 |
tgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatc |
470 |
Q |
| |
|
||| |||||||||||||||||||| |||| || || ||||| || ||||||||||| ||||| | ||||||||||||| || || | ||| ||| | |
|
|
| T |
42625888 |
tgctcttcaatggatgcaagacatgtaatttgataatatagactttgagcttgattcaaaaatcatacgagatgctttccattctcgcacgatcgatgtt |
42625987 |
T |
|
| Q |
471 |
acagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacag |
570 |
Q |
| |
|
||||| |||||| |||| ||||||| ||| ||||| |||||| | || || |||||||| || ||||||| |||||||||||||||||| | | | |
|
|
| T |
42625988 |
acagagtttggccatataattgatgtgtgccgagacattttttccacctcttttacaaactcccggttcgagttcattaggcgacaagcgaatgcggcgg |
42626087 |
T |
|
| Q |
571 |
ctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatg |
624 |
Q |
| |
|
||||||| | || ||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
42626088 |
ctcatgctctggctagagaagcaacatccttagctagtcccgttatttattatg |
42626141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 256 - 631
Target Start/End: Complemental strand, 12527000 - 12526625
Alignment:
| Q |
256 |
ggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaac |
355 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||| ||||||||||||||||| ||||| | ||| | |
|
|
| T |
12527000 |
ggacaggtatcagtgtgtgtattcgggatgatttcggaacctttgtgctagctaaagtgctgcaatttgatcaagtttatcccgtagcaatcaatgaagc |
12526901 |
T |
|
| Q |
356 |
tttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcc |
455 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||||||| || || ||| | || |||||||| || ||||| || ||||||||||||| || |
|
|
| T |
12526900 |
gttgggtttgtatcatgctattcaatggatgcaagacatgcaatttgataatatacactttgagcttgactcaaaaatcacacgagatgctttccattct |
12526801 |
T |
|
| Q |
456 |
cgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgac |
555 |
Q |
| |
|
|| | | | ||| | ||||| |||||| |||| ||||||| ||| ||||| |||||| | || || |||||||| | || | || |||||||||| |
|
|
| T |
12526800 |
cgcacggtcgatgttacagagtttggccatataattgatgcgtgccgagacattttttccacctcttttacaaactcccgaatcaatttcattaggcgac |
12526701 |
T |
|
| Q |
556 |
aagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|| ||||| | | |||||||| | | ||| ||| || |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
12526700 |
aaacgaatgcggcggctcatgctctggttagaaaagccacatccttagctagtcccattatttattatgctatccc |
12526625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 629
Target Start/End: Original strand, 45004201 - 45004290
Alignment:
| Q |
540 |
gagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatc |
629 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| ||||||||||||| || |||| |||||||||||| |||||||||||||||| |
|
|
| T |
45004201 |
gagtttattaggcgacaagcgaattcggcggctcatgctttagcaagagaagccacttccctagctagtcccattatttattatgcaatc |
45004290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 622
Target Start/End: Complemental strand, 54561647 - 54561550
Alignment:
| Q |
525 |
acaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttatta |
622 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||||||| | | ||||||||||| ||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
54561647 |
acaaactccatggtggagtttattaggcgacaagcgaatgcggcggctcatgccttggcaagagaagttatttccttagctagttccaccatttatta |
54561550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 397
Target Start/End: Complemental strand, 54561942 - 54561775
Alignment:
| Q |
229 |
acgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatca |
328 |
Q |
| |
|
|||||||||| ||| ||||||| ||| |||||||||| | | ||| | ||||||||| | ||||||||||| ||||| ||||| ||| |||||| | |
|
|
| T |
54561942 |
acgcagctttttctgaacaatttcaaaggacaggtataggggtttgtttacgggatgataccagaacttttgtgttagccaaagtactgcaatttgatta |
54561843 |
T |
|
| Q |
329 |
agtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgca |
397 |
Q |
| |
|
|||| || || |||||||||||| ||||||| |||| |||||| ||| ||||||||||||| ||||| |
|
|
| T |
54561842 |
tctttaccc-gtggctgttggcgaagctttgggcctttttcatgctattaaatggatgcaagatatgca |
54561775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 631
Target Start/End: Complemental strand, 13639113 - 13638496
Alignment:
| Q |
13 |
cagagagtagtgcacaagtggttgagagggcgtgacatctaattgaggactggcatgaagccaatctgccaagccaaactgcgcctctgcaggaggccgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
13639113 |
cagagagtagtgcacaagtggttgagagggcgcgacatataattgaggactggcaggaagccaatcttccaagccaaactgcgcctctgcaggaggctgc |
13639014 |
T |
|
| Q |
113 |
acagcagcaggctgctaacacattgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggagg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13639013 |
gcagcagcaggctgctaacacattgcagcatagtgtgcagccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggagg |
13638914 |
T |
|
| Q |
213 |
ttcaaatgcaatattgacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaag |
312 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13638913 |
ttcaaatgcaatattgacgcggatttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttagctaaag |
13638814 |
T |
|
| Q |
313 |
tgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacataga |
412 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13638813 |
tgatgccttttgatcaagtttatctggtagctgttggcgaagctttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacataga |
13638714 |
T |
|
| Q |
413 |
tttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13638713 |
tttcgagcttgattctaaaataacgagagatgctttccactccattatgacagatatcacaaaatttggcaatattattgatgagtgtcgagagcaattt |
13638614 |
T |
|
| Q |
513 |
tccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtccca |
612 |
Q |
| |
|
| ||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
13638613 |
t-cccttccttcacagactctagggtagggtttattaggcgacaagcgaatatggcagctcatgccttagcaagagaagccatttctttagctagtccca |
13638515 |
T |
|
| Q |
613 |
ctatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
13638514 |
ctatttattatgtaatccc |
13638496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 157 - 631
Target Start/End: Complemental strand, 8862802 - 8862328
Alignment:
| Q |
157 |
aaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttcaaatgcaatattgacgcagctttctctaaacaattccaatg |
256 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| | |
|
|
| T |
8862802 |
aaaattccccaactggacgtgctgtcccgaaatggtttccacctagtagggggaggttcaaatgcaatattgacacgactttctctgaacaattccaacg |
8862703 |
T |
|
| Q |
257 |
gacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaact |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
8862702 |
gacaggtatcagaatgtgtcttcgggatgattttggaacttttgttttagctaaagtgaaaccttttgatcaagtttatccggtagctgttggcgaagct |
8862603 |
T |
|
| Q |
357 |
ttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactccc |
456 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8862602 |
ttaggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacctagatttcaagcttgattctaaaataacgagagatgctttccactccc |
8862503 |
T |
|
| Q |
457 |
gtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgaca |
556 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8862502 |
gtatgacagatatcacaaaatttggcaatattattgatgagtgtcgagagcaatttttcccttccttgacaaactctagggtcgagtttattaggcgaca |
8862403 |
T |
|
| Q |
557 |
agcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8862402 |
agcgaatatggcagttcgtgccttagcaagagaagccatttccttagctagtcccactatttattatgcaatccc |
8862328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 29961415 - 29961871
Alignment:
| Q |
13 |
cagagagtagtgcacaagtggttgagagggcgtgacatctaattgaggactggcatgaagccaatctgccaagccaaactgcgcctctgcaggaggccgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
29961415 |
cagagagtagtgcacaagtggttgagagggcgcgacatctaattgaggactggcaggaagc-------------caaactgcgcctctgcaggaggccgc |
29961501 |
T |
|
| Q |
113 |
acagcagcaggctgctaacacattgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggagg |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
29961502 |
acaacagcaggctgctaacacattgcagcatagtgtgcagccccaaaattccccaactggacctgctctcccgcaatggtttccgcctagtatggggagg |
29961601 |
T |
|
| Q |
213 |
ttcaaatgcaatattgacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaag |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29961602 |
ttcaaatgcaatattgacgcggctttctctaagcaataacaacggacaggtatcggaatgtgtcttcgggatgattctggaacttttgttttagctaaag |
29961701 |
T |
|
| Q |
313 |
tgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacataga |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29961702 |
tgatgccttttgatcaagtttatccgatagctgttggcgaagctttgggtctttatcatgtcattcaatggatgcaagacatgcaattcgacaacataga |
29961801 |
T |
|
| Q |
413 |
tttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggc |
482 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29961802 |
tttcgagcttgattcgaaaataatgagagatggtttccactcccgtatgacagatatcacagaatttggc |
29961871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 539 - 631
Target Start/End: Original strand, 29961871 - 29961963
Alignment:
| Q |
539 |
cgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29961871 |
cgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagagaagccatttccttagctattcccactatttattatgcaatccc |
29961963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 282 - 451
Target Start/End: Complemental strand, 41864862 - 41864693
Alignment:
| Q |
282 |
gatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaat |
381 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||||| || || ||||| |||||||| | ||||||| |||||||| |||||| |
|
|
| T |
41864862 |
gatgattctggaacttttgtgttagctaaagtgatgcaatttgatcaagtctaccccgtagcagttggcgaggcagtgggtctatatcatgcacttcaat |
41864763 |
T |
|
| Q |
382 |
ggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttcca |
451 |
Q |
| |
|
|||||||||| |||||||| || || ||||| || ||||||||||| ||||| || ||||||||||||| |
|
|
| T |
41864762 |
ggatgcaagatatgcaatttgataatatagactttgagcttgattcgaaaatcactcgagatgctttcca |
41864693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 612
Target Start/End: Complemental strand, 42510183 - 42510093
Alignment:
| Q |
522 |
ttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtccca |
612 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| | | |||||||| |||||||| |||| || ||| ||||||||||||| |
|
|
| T |
42510183 |
ttcacaaactcaagggttgagtttattaggcgacaagcgaatgcggcggctcatgcgttagcaagggaagccacttctttagctagtccca |
42510093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8862855 - 8862806
Alignment:
| Q |
13 |
cagagagtagtgcacaagtggttgagagggcgtgacatctaattgaggac |
62 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8862855 |
cagatagtagtgcacaagtggttgagagggcgcgacatctaattgaggac |
8862806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 591
Target Start/End: Complemental strand, 9942070 - 9941896
Alignment:
| Q |
417 |
gagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccc |
516 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| | ||| | || ||| | ||| ||||| | ||||||||||| ||||| ||| || ||| |
|
|
| T |
9942070 |
gagcttgattccaaaatcacgagagatgcgttccatttccgcaagacggatgtttgagattttggtagtattattgatgcgtgtcaagatttgttctcca |
9941971 |
T |
|
| Q |
517 |
cttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaag |
591 |
Q |
| |
|
|||| || |||||||||||| | |||||||| | ||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
9941970 |
cttcttttacaaactctaggattgagtttatctgacgacaagcgaatacggcagctcatgccttagcacgagaag |
9941896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 621
Target Start/End: Original strand, 25997751 - 25997837
Alignment:
| Q |
535 |
gggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttatt |
621 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||||||||||||||||||||| || ||||||| |||||||| || ||||| |
|
|
| T |
25997751 |
gggttgagtttattaggcgacaagcgaatgcgggcgctcatgccttagcaagagaagccacatccttagttagtcccattacttatt |
25997837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 271 - 457
Target Start/End: Complemental strand, 17205464 - 17205280
Alignment:
| Q |
271 |
tgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagttta-tccagtagctgttggcgaaactttgggtctttatc |
369 |
Q |
| |
|
||||| |||| ||||||||| |||| ||||| |||||||||||| ||| ||||||||||| || || ||||| |||||||| | |||| ||| |||| |
|
|
| T |
17205464 |
tgtgtattcgtgatgattctggaacctttgtgttagctaaagtgctgcaatttgatcaagtctacccccgtagcagttggcgaggcgttggatctatatc |
17205365 |
T |
|
| Q |
370 |
atgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccg |
457 |
Q |
| |
|
|||| |||||| ||||||| |||||||| || || ||| | || ||||||||||| ||||| || |||||||||| || ||||| |
|
|
| T |
17205364 |
atgcacttcaat---tgcaagatatgcaatttgataatataaaatttgagcttgattcaaaaatcacacgagatgcttttcattcccg |
17205280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 631
Target Start/End: Original strand, 44675351 - 44675447
Alignment:
| Q |
535 |
gggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||| |||||| ||||||||||||||||| | | |||||||| | |||||||||| | |||||||||||||||||| | |||||||| |||||| |
|
|
| T |
44675351 |
gggtagagtttgttaggcgacaagcgaattcggctgctcatgctctcgcaagagaagccgtttccttagctagtcccatcacttattatgtaatccc |
44675447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 40063233 - 40063177
Alignment:
| Q |
521 |
cttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgc |
577 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
40063233 |
cttcacaaactctcgggttgagttcattaggcgacaagcgaatgcggcagctcatgc |
40063177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 631
Target Start/End: Original strand, 45600364 - 45600966
Alignment:
| Q |
14 |
agagagtagtgcacaagtggttgagagggcgtgacatctaattgaggactggcatgaagccaatctgccaagccaaactgcgcctctgcaggaggccgca |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
45600364 |
agagagtagtgcacaagtggttgagagagcgcgacatctaattaaggactagcaggaagc-------------caaactgcgcctctacaggaggccgca |
45600450 |
T |
|
| Q |
114 |
cagcagcaggctgctaacacattgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggt |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45600451 |
cagcagcaggttgctaacacattgcagcatagtgtgcagccccaaaatttcccaactggacctgctgtcccgcaatggtttccgcctagtagggggaggt |
45600550 |
T |
|
| Q |
214 |
tcaaatgcaatattgacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagt |
313 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45600551 |
tcaaatgcaatattgacgcgactttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagt |
45600650 |
T |
|
| Q |
314 |
gatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagat |
413 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
45600651 |
gatgccttttgatcaagtttatctggtagttgttggcgaagctttgggtctttatcatgccattcaatggatgcaagacatgtaatt--acaacatagat |
45600748 |
T |
|
| Q |
414 |
ttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaatttt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45600749 |
ttcgagcttgattctaaaataacgagagatgctttccactcccgtatgacaaatatcacaaaatttggcaatattattgatgagtgtcgagagcaatttt |
45600848 |
T |
|
| Q |
514 |
ccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccac |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45600849 |
tcccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagagaagccatttccttagctagtcccac |
45600948 |
T |
|
| Q |
614 |
tatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45600949 |
tatttattatgcaatccc |
45600966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 271 - 624
Target Start/End: Original strand, 17178596 - 17178949
Alignment:
| Q |
271 |
tgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatca |
370 |
Q |
| |
|
||||| |||||||||||||| |||| |||| |||||||||||| ||| |||||||||||||| || ||||| || || ||| | |||||| | ||||| |
|
|
| T |
17178596 |
tgtgtattcgggatgattctggaaccattgtgttagctaaagtgttgcaatttgatcaagtttaccccgtagcagtaggtgaagcgttgggtttgtatca |
17178695 |
T |
|
| Q |
371 |
tgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatc |
470 |
Q |
| |
|
||| |||||||||||||||| ||||| || || |||||||| || ||||||||||| ||||| || ||||||| ||| | || || | | ||||| | |
|
|
| T |
17178696 |
tgctcttcaatggatgcaagatatgcactttgataacatagactttgagcttgattcaaaaatcactcgagatgccttctattctcgcacggtagatgtt |
17178795 |
T |
|
| Q |
471 |
acagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacag |
570 |
Q |
| |
|
||||| |||||| |||| |||||| ||| ||||| |||||| | ||||| |||||||| |||||||||| |||| ||||||||| ||| ||| |
|
|
| T |
17178796 |
acagagtttggccatataattgatacgtgccgagacattttttccacctcctttacaaactcctgggtcgagttcattatgcgacaagcaaatgcgacga |
17178895 |
T |
|
| Q |
571 |
ctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatg |
624 |
Q |
| |
|
||||||| || || ||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
17178896 |
ctcatgctttggctagagaagccacatccttagctagtcccattatttattatg |
17178949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 363 - 632
Target Start/End: Original strand, 28384946 - 28385215
Alignment:
| Q |
363 |
ctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatga |
462 |
Q |
| |
|
||||||||||| || ||||||||| |||| |||| || || ||||| || || ||||||||||| ||||| ||||||||||| ||||| ||||| | || |
|
|
| T |
28384946 |
ctttatcatgctatccaatggatgaaagatatgcgttttgataacatcgactttgagcttgattccaaaatcacgagagatgcgttccattcccgcaaga |
28385045 |
T |
|
| Q |
463 |
tagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaa |
562 |
Q |
| |
|
|||| | |||||||||| | ||||||||||| ||||||||| || ||| ||| || ||||||||||| ||||||||||| |||||||||| || |
|
|
| T |
28385046 |
cagatgtttcagaatttggtagtattattgatgcgtgtcgagatttgttctccaattcttttacaaactctagagtcgagtttatccggcgacaagcaaa |
28385145 |
T |
|
| Q |
563 |
tatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccct |
632 |
Q |
| |
|
| | ||| |||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
28385146 |
tgcggcagttcatgccttagcaagagaagccacttccttagctagtccccatatttattatgaaatccct |
28385215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 632
Target Start/End: Complemental strand, 38489182 - 38488907
Alignment:
| Q |
357 |
ttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactccc |
456 |
Q |
| |
|
||||| ||||||||||| || ||||||||| |||| ||| || || ||||| || || |||||| |||| ||||| || |||||||| || || |||| |
|
|
| T |
38489182 |
ttgggcctttatcatgctatccaatggatgaaagatttgcgttttgataacatcgactttgagcttaattccaaaatcacaagagatgcgttacattccc |
38489083 |
T |
|
| Q |
457 |
gtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgaca |
556 |
Q |
| |
|
| | || ||| | |||||||||| | ||||||||||| |||||| | || ||| |||| || ||||||||||||||||||||||| | ||||| |
|
|
| T |
38489082 |
gcaagacggatgtttcagaatttggtagtattattgatgcatgtcgatatttgttctccacttcttttacaaactctagggtcgagtttatctgacgaca |
38488983 |
T |
|
| Q |
557 |
agcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccct |
632 |
Q |
| |
|
| ||||| | |||||||||||||||||||||||| || || ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38488982 |
aacgaatgcggcagctcatgccttagcaagagaagccactttcttagctagtccccatatttattatgaaatccct |
38488907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 389 - 610
Target Start/End: Complemental strand, 26333894 - 26333677
Alignment:
| Q |
389 |
agacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatatt |
488 |
Q |
| |
|
||||||||||||||| | | ||||| ||| ||||||| || || |||||||||||||| || ||||| | ||| ||| | ||||| ||||| ||||| |
|
|
| T |
26333894 |
agacatgcaattcgatcatgttgattttgagattgattccaagatcacgagagatgcttttcattcccgcacgatggatgttacagagtttgg-aatatc |
26333796 |
T |
|
| Q |
489 |
attgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagag |
588 |
Q |
| |
|
|||| || ||| ||||| ||||| ||| ||||||||||| ||||| |||||||||||||||||||||| | | | | |||||| |||||||| | |
|
|
| T |
26333795 |
attggtgcgtgccgagaattgttttc---ttctttcacaaactcaagggttgagtttattaggcgacaagcgattgcggcggttcatgcgttagcaaggg |
26333699 |
T |
|
| Q |
589 |
aagtcatttccttagctagtcc |
610 |
Q |
| |
|
||| || ||| ||||||||||| |
|
|
| T |
26333698 |
aagccacttctttagctagtcc |
26333677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 559
Target Start/End: Complemental strand, 24427635 - 24427604
Alignment:
| Q |
528 |
aactctagggtcgagtttattaggcgacaagc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24427635 |
aactctagggtcgagtttattaggcgacaagc |
24427604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 611
Target Start/End: Complemental strand, 21249706 - 21249616
Alignment:
| Q |
521 |
cttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtccc |
611 |
Q |
| |
|
||||||||||||| |||| ||||| | |||||||||||||||| | |||||||||| | ||| | || |||| ||| |||||||||||| |
|
|
| T |
21249706 |
cttcacaaactctcgggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgcaggggaggtcacttctttagctagtccc |
21249616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 135 - 629
Target Start/End: Original strand, 12642753 - 12643247
Alignment:
| Q |
135 |
ttgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttcaaatgcaatattgacgcag |
234 |
Q |
| |
|
|||||||||| ||| | |||||||||||| ||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||| || | |
|
|
| T |
12642753 |
ttgcagcatagtgtgcagccccaaaattctccaactggacctgcttccgtgcaatggtttccgtctagtaggaggaggttcaaatgcaatattgatgcgg |
12642852 |
T |
|
| Q |
235 |
ctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagttta |
334 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12642853 |
ctttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttagctaaagtgatgcattttgatcaagttta |
12642952 |
T |
|
| Q |
335 |
tccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaata |
434 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
12642953 |
tccggtagttgttggcgaagctttgggtctttatcatgtcattcaatggatgcaagacatgcaatttgacaacatagatttcaagcttgattctaaaata |
12643052 |
T |
|
| Q |
435 |
acgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactcta |
534 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
12643053 |
accagagatgctttccactcccgtatgacagatatcacagaatttggcaatatgattgatgagtgtcgagagcaatttttctcttccttcacaaactcta |
12643152 |
T |
|
| Q |
535 |
gggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatc |
629 |
Q |
| |
|
||||||||||||| |||||||||||||||| | | |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12643153 |
gggtcgagtttatgaggcgacaagcgaatacggcggctcatgctttagcaagagaagccatttccttagctaatcccactatttattatgcaatc |
12643247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 154 - 631
Target Start/End: Complemental strand, 13812133 - 13811658
Alignment:
| Q |
154 |
cccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttcaaatgcaatattgacgcagctttctctaaacaattcca |
253 |
Q |
| |
|
|||||||| ||| | |||| |||| ||| | ||||||| | || ||||| || ||||| ||||||||||| || ||||| |||||||| || ||||| |
|
|
| T |
13812133 |
cccaaaatgcccaatctggtcctgatgtgcagcaatgggtgccacctagcagcgggagattcaaatgcaacatcgacgcggctttctcggaaactttcca |
13812034 |
T |
|
| Q |
254 |
atggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaa |
353 |
Q |
| |
|
| |||| |||| || ||||||| |||||||| | |||| ||||||||| |||||||| ||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
13812033 |
acggac--gtattggagtgtgtctcagggatgatcatggaacgtttgttttaactaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaa |
13811936 |
T |
|
| Q |
354 |
actttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccact |
453 |
Q |
| |
|
| | |||||||| ||||||||||||||||||||||||||||| |||||||| | ||||| ||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
13811935 |
gcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaatgtggattttgagctagattctaagattacgagggatgctttccact |
13811836 |
T |
|
| Q |
454 |
cccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcg |
553 |
Q |
| |
|
|||||| || |||| | | ||| |||||||||||||||||||||||| | | |||||||| | | || ||||||||||||||||| |||||||||||||| |
|
|
| T |
13811835 |
cccgtaagacagatgttatagagtttggcaatattattgatgagtgttgggtgcaatttttctcctctttcacaaactctagggttgagtttattaggcg |
13811736 |
T |
|
| Q |
554 |
acaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||| | | |||||||| ||||||||||||| || |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
13811735 |
acaagcgaatgcggcggctcatgctttagcaagagaagccacttccttagctagtcccgatatttattatgtaatccc |
13811658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 470 - 631
Target Start/End: Complemental strand, 19382845 - 19382684
Alignment:
| Q |
470 |
cacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgaca |
569 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
19382845 |
cacagaatttggcaatcttattgatgagtgttgagagcaatttttccattccttcacaaactctagggttgagtttattaggcgacaagcgaatatggca |
19382746 |
T |
|
| Q |
570 |
gctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19382745 |
gctcatgccttagcaagagaagtcatttccttagctagtcccacaatttattatgcaatccc |
19382684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 256 - 629
Target Start/End: Complemental strand, 23477275 - 23476902
Alignment:
| Q |
256 |
ggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaac |
355 |
Q |
| |
|
||||||||||| | ||||| | || ||||||||| |||||||||| |||| |||||| ||| ||||||||| | | ||| |||||| | || ||| | |
|
|
| T |
23477275 |
ggacaggtatcggcgtgtgtatacgtgatgattctggaacttttgtgctagcaaaagtgttgcaatttgatcaattatttcctgtagctatcggtgaagc |
23477176 |
T |
|
| Q |
356 |
tttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcc |
455 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||| ||||| || || || ||||| || || |||||||| ||||| || |||||||||| ||||| |
|
|
| T |
23477175 |
gttgggtctatatcatgttatgcaatggatgcaagatatgcattttgataatatagactttgaacttgattcaaaaatcactcgagatgctttttactcc |
23477076 |
T |
|
| Q |
456 |
cgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgac |
555 |
Q |
| |
|
|||| ||| || | ||||||||||| ||||||||||| | ||| |||||| |||||| | ||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
23477075 |
cgtacgatcgacgttacagaatttggaaatattattgacgcgtgccgagagattttttccacctcctttacaaactcccgggtagagtttattaggcgac |
23476976 |
T |
|
| Q |
556 |
aagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatc |
629 |
Q |
| |
|
|||||||| | | |||||||| ||||||||||||| || |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
23476975 |
aagcgaatgcggcggctcatgctttagcaagagaagccacttccctagctaatcccattatttattatgcaatc |
23476902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 256 - 631
Target Start/End: Complemental strand, 13700548 - 13700173
Alignment:
| Q |
256 |
ggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaac |
355 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||| |||| ||||| ||||||||||||||| ||||||||||| | ||| ||||| || || ||| | |
|
|
| T |
13700548 |
ggacaggtatcggcgtgtgtattcgggatgattccggaacctttgtgctagctaaagtgatgcaatttgatcaagtctttcccgtagcagtcggtgaagc |
13700449 |
T |
|
| Q |
356 |
tttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcc |
455 |
Q |
| |
|
|||||| | |||||||| |||||||||| |||||||||||||| || || ||||| || ||||||||||| |||||||| ||||||||||||| || |
|
|
| T |
13700448 |
gttgggtttgtatcatgctcttcaatggatacaagacatgcaatttgataatatagactttgagcttgattcaaaaataacacgagatgctttccattct |
13700349 |
T |
|
| Q |
456 |
cgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgac |
555 |
Q |
| |
|
|| ||| | ||| | ||||| |||||| |||| ||||||| ||| ||| | |||| | | | || || ||||| |||||||||| |||||| ||| |
|
|
| T |
13700348 |
cgcatggtcgatgttacagagtttggccatataattgatgcgtgccgaaacattttttgcaccttttttacgaactcccgggtcgagttcattaggtgac |
13700249 |
T |
|
| Q |
556 |
aagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||| | | |||||||| | | |||||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
13700248 |
aagcgaatgcggcggctcatgctctggttagagaagtcacatccttagctagtcccattatttattatgctatccc |
13700173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 357 - 632
Target Start/End: Original strand, 22897691 - 22897965
Alignment:
| Q |
357 |
ttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactccc |
456 |
Q |
| |
|
||||| ||||||||||| || ||||||||| |||| ||| || || ||| | || || ||||||||||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
22897691 |
ttgggcctttatcatgctatccaatggatgaaagatttgcgttttgataacgtcgactttgagcttgattccaaaatcacgagagatgcgttccattccc |
22897790 |
T |
|
| Q |
457 |
gtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgaca |
556 |
Q |
| |
|
| | || ||| | |||||||||| | ||||||||||| ||||||||| || ||| |||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
22897791 |
gcaagacggatgtttcagaatttggtagtattattgatgcgtgtcgagattt-ttctccacttcttttacaaactctagggtcgagtttacccggcgaca |
22897889 |
T |
|
| Q |
557 |
agcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccct |
632 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| || ||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
22897890 |
agcgaatgcggcagctcatgccttagcacgagaagccacttccttagctagttcccatatttattatgaaatccct |
22897965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 630
Target Start/End: Original strand, 9530536 - 9530631
Alignment:
| Q |
535 |
gggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatcc |
630 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | | |||||| | | ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9530536 |
gggtagagtttattaggcgacaagtgaattcggcggctcatactcttgcaagagaagtaatttccttagctagtcccactatttattatgtaatcc |
9530631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 296 - 631
Target Start/End: Original strand, 30847973 - 30848308
Alignment:
| Q |
296 |
ttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatg |
395 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
30847973 |
ttttgttttagctaatgtgatgccttttgatcaagtttatccggtagctgttggtgaagctttgggtctttatcatgtcattcaatggatgtaagacatg |
30848072 |
T |
|
| Q |
396 |
caattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatg |
495 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30848073 |
caattcgacaacatagattttgagcttgattctaaaataacgagagatgctttccactcccgtatgacagatatcacagaatttggcaatattattgatg |
30848172 |
T |
|
| Q |
496 |
agtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcat |
595 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
30848173 |
agtgtcgagagcaatttttcccttctttcacaaactctacggtcgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagagaagccat |
30848272 |
T |
|
| Q |
596 |
ttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30848273 |
ttccttagctagtcccactatttattatgcaatccc |
30848308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 285 - 626
Target Start/End: Original strand, 1901944 - 1902286
Alignment:
| Q |
285 |
gattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatgga |
384 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| || ||| |||| |||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1901944 |
gattctggaccttttgttttagctaaagtgatgccttttgatcgggt--atctggtaggtgttggcgaagttttgggtctttatcatgccattcaataga |
1902041 |
T |
|
| Q |
385 |
tgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaa |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
1902042 |
tgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcctgtatgacatatatcacagaatttggcaa |
1902141 |
T |
|
| Q |
485 |
tattattga----tgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgcctt |
580 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
1902142 |
tattattgatgagtgagtgtcgagagcaatttt-cccttccttcacaaactctagggtcgagtttattaggcgacaaacgaatatggcagctcatgcctt |
1902240 |
T |
|
| Q |
581 |
agcaagagaagtcatttccttagctagtcccactatttattatgca |
626 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1902241 |
agcaagagaagtcatttccttaactagtcccactatttattatgca |
1902286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 228 - 629
Target Start/End: Complemental strand, 26501715 - 26501314
Alignment:
| Q |
228 |
gacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatc |
327 |
Q |
| |
|
||||| ||||||||| || |||||| |||||||||||||| |||||||| ||||| || | ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26501715 |
gacgcggctttctctgaaactttccaacggacaggtatcagagtgtgtcttagggataatcatggaacttttgttttagctaaagtgctgcaatttgatc |
26501616 |
T |
|
| Q |
328 |
aagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattc |
427 |
Q |
| |
|
|||||||||| |||||||||||||| || | |||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||| |
|
|
| T |
26501615 |
aagtttatccggtagctgttggcgaggctctaggtctttaccatgccatacaatggatgcaagacatgcaattcgacaatgtagacttcaagctagattc |
26501516 |
T |
|
| Q |
428 |
taaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcaca |
527 |
Q |
| |
|
|||||||| ||| |||||||||||||||| | || |||| | |||||||||||||||||||||||||||||||||| |||||||| | | || |||||| |
|
|
| T |
26501515 |
taaaataaagagggatgctttccactcccttgagacagatgttacagaatttggcaatattattgatgagtgtcgagtgcaatttttctcctctttcaca |
26501416 |
T |
|
| Q |
528 |
aactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaa |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | ||||||| ||||||||| |||||| ||||||| |||||||| ||||||||||| || |
|
|
| T |
26501415 |
aactctagggtcgagtttattaggcgacaaatgaatgtggcggctcatggtttagcaagaaaagtcacttccttaattagtcccaatatttattatgtaa |
26501316 |
T |
|
| Q |
628 |
tc |
629 |
Q |
| |
|
|| |
|
|
| T |
26501315 |
tc |
26501314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 466 - 631
Target Start/End: Original strand, 13681238 - 13681403
Alignment:
| Q |
466 |
atatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatat |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13681238 |
atatcacagaatttggcaatattattgatgagtgtcgagagcaatttttctcttccttcacaaactctagggtcaagtttattaggcgacaagcgaatac |
13681337 |
T |
|
| Q |
566 |
gacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13681338 |
ggcggctcacgccttagcaagagaagccatttccttagctagtcccactatttattatgcaatccc |
13681403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 30847313 - 30847126
Alignment:
| Q |
16 |
agagtagtgcacaagtggttgagagggcgtgacatctaattgaggactggcatgaagccaatctgccaagccaaactgcgcctctgcaggaggccgcaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
30847313 |
agagtagtgcacaagtggttgagagggcgcgacatctaattgaggactggcaggaagccaa-------------actgcgcctctgcaggcggccgc--- |
30847230 |
T |
|
| Q |
116 |
gcagcaggctgctaacacattgcagcatattgtacggccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30847229 |
gcagcaggctgctaacacattgcagcatagtgtgcagccccaaaattccccaactggacctgctgtcccgcaatggtttccgcctagtagggggaggttc |
30847130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 30846563 - 30846457
Alignment:
| Q |
212 |
gttcaaatgcaatattgacgcagctttctctaaacaattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaa |
311 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
30846563 |
gttcaaatgcaatattgacgcggctttctctgaacaattccaacggacaggtatcggaatgtgtcttcgaaatgattctggaacttttgttttagttaaa |
30846464 |
T |
|
| Q |
312 |
gtgatgc |
318 |
Q |
| |
|
||||||| |
|
|
| T |
30846463 |
gtgatgc |
30846457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 631
Target Start/End: Original strand, 25393345 - 25393449
Alignment:
| Q |
527 |
aaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgca |
626 |
Q |
| |
|
||||||| |||| |||||| |||| |||||||||||| | | |||||||| | |||||||||| ||||||||||||||||||| | || ||||| | |
|
|
| T |
25393345 |
aaactctcgggtagagtttgttagacgacaagcgaattcggctgctcatgctctcgcaagagaagctgtttccttagctagtcccaccactttttatgta |
25393444 |
T |
|
| Q |
627 |
atccc |
631 |
Q |
| |
|
||||| |
|
|
| T |
25393445 |
atccc |
25393449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 198 - 631
Target Start/End: Complemental strand, 15543892 - 15543457
Alignment:
| Q |
198 |
cctagtagggggaggttcaaatgcaatattgacgcagctttctctaaacaattccaatggacagg--------tatcagaatgtgtcttcgggatgattc |
289 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||||| |||| || || ||||||| |||||| ||||| ||| ||||||||| |
|
|
| T |
15543892 |
cctagtagtgggagattcaaatgcaatattgacgcggctttctctgaacagtttcagcggacaggcggacaggtatcag--tgtgtattcaggatgattc |
15543795 |
T |
|
| Q |
290 |
tagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaa |
389 |
Q |
| |
|
| ||||| || | |||||||||||| | | |||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
15543794 |
tggaactcttatgttagctaaagtgctacaatttgatcatgtttatccggtagctgttagcgaagctttgggtctttatcatgccattcaatggaagcaa |
15543695 |
T |
|
| Q |
390 |
gacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatatta |
489 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||| | || | || | ||||||||||| |||||| |
|
|
| T |
15543694 |
gacatgcaattcaacaacacagacttcgagcttgattcaaaaataacgagagatgctttccattcccgcacgacaaatgttacagaatttggaaatattc |
15543595 |
T |
|
| Q |
490 |
ttgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagaga |
589 |
Q |
| |
|
|||||| ||| ||||||||||| | | ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
15543594 |
ttgatgtgtgccgagagcaattcttctcttttttcacaaatggtagggtcgagtttattaggcgacaagcgaatgcagcagctcatgccttaacaaga-- |
15543497 |
T |
|
| Q |
590 |
agtcatttccttagctagtcccactatttattatgcaatccc |
631 |
Q |
| |
|
| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
15543496 |
--ctacttccttagctagtccgattatttattatgcaatccc |
15543457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 297 - 629
Target Start/End: Original strand, 33480162 - 33480493
Alignment:
| Q |
297 |
tttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgc |
396 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| ||| |||||| | |||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
33480162 |
tttgttttagctaaagtgctgcagtttgatcaagtttatccaatagttgttggtgtggctttgggtctatatcatgctcttcagtggatgcaagacatgc |
33480261 |
T |
|
| Q |
397 |
aattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatga |
496 |
Q |
| |
|
|||| || || ||||| || |||| |||| | ||||||||| ||||||||||||| ||||| | ||| ||| | ||||| ||||| ||||||||||| | |
|
|
| T |
33480262 |
aatttgataatatagactttgagcatgatac-aaaataacgcgagatgctttccattcccgcacgatcgatgttacagagtttggaaatattattgacgc |
33480360 |
T |
|
| Q |
497 |
gtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatt |
596 |
Q |
| |
|
||| |||||| ||| ||| | | ||||||||||| | |||||||||| ||||| || || ||||| | ||||||||| |||||||||||| || |
|
|
| T |
33480361 |
gtgctgagagctattctccacctttttcacaaactccatggtcgagtttgttaggagaaaaacgaatgcggtggctcatgccctagcaagagaagccaca |
33480460 |
T |
|
| Q |
597 |
tccttagctagtcccactatttattatgcaatc |
629 |
Q |
| |
|
| ||| |||||||| ||||||||||| |||| |
|
|
| T |
33480461 |
ttcttttatagtcccattatttattatgaaatc |
33480493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 256 - 624
Target Start/End: Complemental strand, 27010106 - 27009738
Alignment:
| Q |
256 |
ggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaac |
355 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||| |||| ||||| ||||||||||| ||| |||||||||||||| || |||| | |||||| | |
|
|
| T |
27010106 |
ggacaggtatcggcgtgtgtattcgggataattccggaacctttgtgctagctaaagtgttgcaatttgatcaagtttaccccatagcagcaggcgaagc |
27010007 |
T |
|
| Q |
356 |
tttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcc |
455 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||| ||||| | || |||||| |||| ||||||||||| ||||| || |||||| |||||| || |
|
|
| T |
27010006 |
gttgggtttgtatcatgctcttcaatggatgcaagatatgcacattgataacatatattttgagcttgattcaaaaatcactcgagatgttttccattct |
27009907 |
T |
|
| Q |
456 |
cgtatgatagatatcacagaatttggcaatattattgatgagtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgac |
555 |
Q |
| |
|
| | ||||| | ||| |||||||| |||| ||||||| ||| ||||| |||||| | ||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
27009906 |
tgcgcggtagatgttacataatttggccatataattgatgcgtgccgagacattttttccacctcctttacaaacttccgggtcgagttcattaggcgac |
27009807 |
T |
|
| Q |
556 |
aagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatg |
624 |
Q |
| |
|
|||||||| | | |||||| || || |||||| || |||||||||| ||||| ||||||||||| |
|
|
| T |
27009806 |
aagcgaatgcggtggttcatgctttggctagagaaaccacatccttagctaatcccattatttattatg |
27009738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 297 - 624
Target Start/End: Original strand, 6231171 - 6231498
Alignment:
| Q |
297 |
tttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgc |
396 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||| | |||||||| ||| ||||| || |||| ||||| |||||||| ||||||||| ||||||| |||| |
|
|
| T |
6231171 |
tttgttttagctaaagtgctgcagtttggtcaaatatatccagttgctattggcaaagctttaggtctctatcatgctattcaatggttgcaagatatgc |
6231270 |
T |
|
| Q |
397 |
aattcgacaacatagatttcgagcttgattctaaaataacgagagatgctttccactcccgtatgatagatatcacagaatttggcaatattattgatga |
496 |
Q |
| |
|
| || ||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||| | | | ||| ||||||||||||| | |||||||| || |
|
|
| T |
6231271 |
attttgacaatatagacttcgagcttgattctaaaataacgagagatgctttcaattcccgcacggtggatgtcacagaatttggaactattattggtgc |
6231370 |
T |
|
| Q |
497 |
gtgtcgagagcaattttccccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatt |
596 |
Q |
| |
|
|||| | | ||| ||| |||| ||||||||||| |||||||||||||| | |||||| ||| || | |||||||||||||||||| |||||| | |
|
|
| T |
6231371 |
atgtcagcatctattctcctcttcattcacaaactcaagggtcgagtttatccgaaaacaagcaaatgtggcggctcatgccttagcaagaaaagtcact |
6231470 |
T |
|
| Q |
597 |
tccttagctagtcccactatttattatg |
624 |
Q |
| |
|
|| ||| ||||| ||||||||||||||| |
|
|
| T |
6231471 |
tctttaactagttccactatttattatg |
6231498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 630
Target Start/End: Original strand, 30870823 - 30870918
Alignment:
| Q |
535 |
gggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgcaatcc |
630 |
Q |
| |
|
|||| |||||||||||| |||||| |||| || | |||||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
30870823 |
gggtagagtttattaggtgacaagtgaatttggcggctcatgctcttgcaagagaagtcatttccctagctagtcccactacttattatgtaatcc |
30870918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 629
Target Start/End: Original strand, 6695577 - 6695680
Alignment:
| Q |
526 |
caaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatgc |
625 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||| | || ||||||| || || ||||||| || ||||||| |||||| | ||| |||||||| |
|
|
| T |
6695577 |
caaactccagagttgagtttattaggcgacaagcgaatgcggcaactcatgctttggctagagaagccacttccttaactagtctctctacttattatgt |
6695676 |
T |
|
| Q |
626 |
aatc |
629 |
Q |
| |
|
|||| |
|
|
| T |
6695677 |
aatc |
6695680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 525 - 624
Target Start/End: Complemental strand, 22786181 - 22786082
Alignment:
| Q |
525 |
acaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatg |
624 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||| || | ||||||| || ||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22786181 |
acaaactccagggtggagttcgctaggcgacaagcgaatgtggcggctcatgtgttggcacgagaagccatttccttagctagtcccactatttattatg |
22786082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 246 - 400
Target Start/End: Complemental strand, 22786460 - 22786306
Alignment:
| Q |
246 |
caattccaatggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagctaaagtgatgccttttgatcaagtttatccagtagctg |
345 |
Q |
| |
|
||||| ||| |||||||||| | || ||| | ||||||||||| |||||||||| ||||| |||||||||| ||||||| | |||| || | | || |
|
|
| T |
22786460 |
caatttcaaaggacaggtattgggatttgtttacgggatgattccggaacttttgtgttagccaaagtgatgcattttgattatctttaccccgcggatg |
22786361 |
T |
|
| Q |
346 |
ttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgcaatt |
400 |
Q |
| |
|
|||| ||| | ||||| || | |||||| ||||||||||||||||| |||||||| |
|
|
| T |
22786360 |
ttggagaagcgttgggactgtttcatgctattcaatggatgcaagatatgcaatt |
22786306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 624
Target Start/End: Original strand, 38950906 - 38951005
Alignment:
| Q |
525 |
acaaactctagggtcgagtttattaggcgacaagcgaatatgacagctcatgccttagcaagagaagtcatttccttagctagtcccactatttattatg |
624 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||| | | | ||||| ||| ||||||||| |||||||||||||| ||| ||| ||||||||| |
|
|
| T |
38950906 |
acaaacttcagggtggagtttattaggtgacaagcgaatgcggcggatcatgtcttgacaagagaagccatttccttagctaatcctactgtttattatg |
38951005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 38950678 - 38950781
Alignment:
| Q |
297 |
tttgttttagctaaagtgatgccttttgatcaagtttatccagtagctgttggcgaaactttgggtctttatcatgccattcaatggatgcaagacatgc |
396 |
Q |
| |
|
||||| ||||| |||||| ||| |||||| | |||| || || |||||||||||| ||||||| |||| |||||| ||||||| ||||||||| || | |
|
|
| T |
38950678 |
tttgtgttagccaaagtgttgcaatttgattatctttaccccgtggctgttggcgaagctttgggcctttttcatgctattcaattgatgcaagatatac |
38950777 |
T |
|
| Q |
397 |
aatt |
400 |
Q |
| |
|
|||| |
|
|
| T |
38950778 |
aatt |
38950781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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