View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_30 (Length: 335)
Name: NF0223_low_30
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 52 - 306
Target Start/End: Complemental strand, 1483148 - 1482894
Alignment:
| Q |
52 |
tcacaatggacatcatgcctagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaa |
151 |
Q |
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| T |
1483148 |
tcacaatggacatcatgcctagcaactcccagaaacccctaatccttaaatcctacacactaatttggttcaatgcacattttacccagcaactccctaa |
1483049 |
T |
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| Q |
152 |
aaccattagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaagaaa |
251 |
Q |
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| T |
1483048 |
aaccattagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaacaaa |
1482949 |
T |
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| Q |
252 |
gagtcatggtgaattccaaacaatttgactaagagaaaagaaacaggtgtcattc |
306 |
Q |
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| T |
1482948 |
gagtcatggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattc |
1482894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 306
Target Start/End: Complemental strand, 36717882 - 36717627
Alignment:
| Q |
71 |
tagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaaaaccattagctgaccatgc |
170 |
Q |
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| T |
36717882 |
tagcaactcccagaaacccttaacc-ttaaatcctacacattggtttgattcaatacacattttgcccagcaactcccaaaaacccttacccaaccatgc |
36717784 |
T |
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| Q |
171 |
atacac--ctacactttctttccacgcttcctctc-------------------aaataaaaattatcaagtaatatagaagaatatattatatcaaaga |
249 |
Q |
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| T |
36717783 |
atacacagctacactttccttccacgcttcctctcagaaagagaaaaaaaaaaaaaaaaaaaacaatcaagtaatagagaaccatatatcttatcaaaca |
36717684 |
T |
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| Q |
250 |
aagagtcatggtgaattccaaacaatttgactaagagaaaagaaacaggtgtcattc |
306 |
Q |
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| T |
36717683 |
aagaatcatggtgaattccaaacaatttgattaagagaaaagaaataggtgtcattc |
36717627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36717931 - 36717882
Alignment:
| Q |
1 |
gcttctctttaaatcaagtttaccccccaaatttctacacactaatttgat |
51 |
Q |
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| T |
36717931 |
gcttctctttaaatcaagtttac-ccccaaattcctacacactagtttgat |
36717882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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