View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_32 (Length: 333)
Name: NF0223_low_32
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 92 - 323
Target Start/End: Original strand, 30119553 - 30119787
Alignment:
| Q |
92 |
aaagaagtactactataatatatatacagctctatttgaattagaaaaatgttacttaggccgaaaaaattcgcataaaaacttcacgatagatatgaat |
191 |
Q |
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| T |
30119553 |
aaagaaggactactataatatata--cagctctatttgaattagaaaa-tgttacttaggccgaaaaaattcgcacaaaatcttcacgatagatatgaat |
30119649 |
T |
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| Q |
192 |
a-------gctatttcgcggacatttttggtatttactagtgttggaaaaatgggtcgtgcccgatcggtccacttaatccgacattttaaacgaaggat |
284 |
Q |
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| T |
30119650 |
aatgaatagctatttagcggacatttttggtatttactagtgt-ggaaaaatgggtcgtgcctgattggtccgtttaatccgacattttaaatgaaggat |
30119748 |
T |
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| Q |
285 |
ttgaactcgataacttaagttgatctactccatttcatt |
323 |
Q |
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||||||||||| | |||||||||||||||| |||||||| |
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| T |
30119749 |
ttgaactcgattatttaagttgatctactctatttcatt |
30119787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 30119458 - 30119543
Alignment:
| Q |
27 |
tcactttcacaagtttctgtcacgtataaagaaacatccaacctggaagctataaacttcatacaaaagaagtactactataatat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30119458 |
tcactttcacaagtttctgtcacgtataaagaaacatccaaccgggaagttataaacttcatacaaaagaagtactactataatat |
30119543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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