View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_low_33 (Length: 331)
Name: NF0223_low_33
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 45389855 - 45390004
Alignment:
| Q |
104 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45389855 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
45389954 |
T |
|
| Q |
204 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45389955 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
45390004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 45374697 - 45374846
Alignment:
| Q |
104 |
cagacctggtatgtttccatgaactttcatcattagctcaggaagattgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaata |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45374697 |
cagacctagtatgtttccatgaactttcatcattagctcaggatgattgtacaagattctgacatatttcgtgtttcatgcagtgcttctttccacaata |
45374796 |
T |
|
| Q |
204 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45374797 |
tgtgttgaaatatatatcaacaccatattttatcttgaactctgcctatg |
45374846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1862 times since January 2019
Visitors: 2394