View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_35 (Length: 329)
Name: NF0223_low_35
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 42404251 - 42404439
Alignment:
| Q |
1 |
ctatagttgctaaaccaaattaagcaatcagacatgagaaatgttgtgcaatgcatattagcagttacgaatatgaaaaatctagcattgaacaatacga |
100 |
Q |
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| T |
42404251 |
ctatagttgctgaacctaatcaaccaatcagacatgagaaatgttgtgcaatgcatgttagcagttacgaatatgaaaaatctagcattgaacaatacga |
42404350 |
T |
|
| Q |
101 |
tacattctcaaaagcacatactgtaaaagtagaaatgaattaatcgcggtggaatcgtattctcgcgcgcgctacatgatcgtacatgg |
189 |
Q |
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| T |
42404351 |
tacattctcaaaagcacatactgtaaaagtagatatgaattaaacgcggtggaatcgtattctcgcgcgcgctacaggatcgtacatgg |
42404439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 42404475 - 42404537
Alignment:
| Q |
230 |
tggatggatagctttctcacggcggccttgtttcctacggcgcccaactccgcctgcgttcag |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42404475 |
tggatggatagctttctcacggcggccttgtttcctacggcgcccaactccgcctgcgttcag |
42404537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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