View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0223_low_36 (Length: 325)

Name: NF0223_low_36
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0223_low_36
NF0223_low_36
[»] chr4 (5 HSPs)
chr4 (85-313)||(54396020-54396248)
chr4 (85-312)||(23596929-23597156)
chr4 (85-312)||(23588077-23588304)
chr4 (134-191)||(9336356-9336413)
chr4 (161-281)||(35132129-35132249)
[»] chr7 (16 HSPs)
chr7 (106-286)||(8017783-8017963)
chr7 (106-285)||(8102285-8102464)
chr7 (149-281)||(17259902-17260034)
chr7 (101-249)||(39985259-39985407)
chr7 (149-309)||(17267600-17267760)
chr7 (149-281)||(7878108-7878240)
chr7 (149-281)||(8581361-8581493)
chr7 (152-186)||(8537700-8537734)
chr7 (152-198)||(8545297-8545343)
chr7 (146-281)||(8575984-8576119)
chr7 (146-281)||(8590296-8590431)
chr7 (146-196)||(8659021-8659071)
chr7 (134-191)||(10494839-10494896)
chr7 (134-191)||(13333833-13333890)
chr7 (152-281)||(27831250-27831379)
chr7 (152-249)||(29582248-29582345)
[»] chr2 (12 HSPs)
chr2 (146-275)||(12245787-12245916)
chr2 (146-281)||(11999066-11999200)
chr2 (149-281)||(12234351-12234482)
chr2 (134-281)||(16657892-16658039)
chr2 (146-219)||(16662429-16662502)
chr2 (143-207)||(5446218-5446282)
chr2 (155-255)||(17648442-17648542)
chr2 (158-282)||(17717061-17717185)
chr2 (134-249)||(43625058-43625173)
chr2 (155-249)||(17718358-17718452)
chr2 (149-198)||(7541887-7541936)
chr2 (149-198)||(14703069-14703118)
[»] chr8 (3 HSPs)
chr8 (149-309)||(12528165-12528325)
chr8 (147-275)||(42325181-42325309)
chr8 (221-282)||(43744549-43744610)
[»] chr1 (2 HSPs)
chr1 (132-198)||(4679015-4679081)
chr1 (152-269)||(15594698-15594815)
[»] chr5 (1 HSPs)
chr5 (152-195)||(28219582-28219625)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 85 - 313
Target Start/End: Original strand, 54396020 - 54396248
Alignment:
Q  85 agtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcaggg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396020 agtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcaggg 54396119  T
Q  185 ttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396120 ttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaa 54396219  T
Q  285 catgactcttatcaatcttagcatccctt 313  Q
    |||||||||||||||||||||||||||||    
T  54396220 catgactcttatcaatcttagcatccctt 54396248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 312
Target Start/End: Complemental strand, 23597156 - 23596929
Alignment:
Q  85 agtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcaggg 184  Q
    ||||||||| ||||||| |||||| || || || ||||  ||||| ||||||||||| || ||||| || ||||| |||||||||||||| |||||||||    
T  23597156 agtaacatccagcaacaaaagatcctgtactttctcattgccttcgccgctcaaaatagcagcttggactgcagcgccataagcaacagcctcatcaggg 23597057  T
Q  185 ttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaa 284  Q
    || || ||||| ||||| || ||||||||||||||||| |||||||| |||||||| || |||||||| || ||||| |||||||||||||| |||| ||    
T  23597056 ttgatgctcttacaaagttccttcccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaa 23596957  T
Q  285 catgactcttatcaatcttagcatccct 312  Q
    ||    ||||||| ||||||||||||||    
T  23596956 cactgttcttatccatcttagcatccct 23596929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 312
Target Start/End: Complemental strand, 23588304 - 23588077
Alignment:
Q  85 agtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcaggg 184  Q
    ||||||||| |||||||  ||||| || || || ||||  || ||||| |||||||| || ||||| || || || ||||| |||||||||||||| |||    
T  23588304 agtaacatccagcaacaacagatcctgcactttctcattgccctcaccactcaaaatagcagcttggacggctgccccatatgcaacagcttcatcgggg 23588205  T
Q  185 ttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaa 284  Q
    || || ||||| |||||||| || |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||||||||||| ||||| |    
T  23588204 ttgatgctcttacaaagctcctttccattgaagaaatcttgcaaaagttgttgaaccttgggaatcctagtggatccaccaacaagaacaacatcatgga 23588105  T
Q  285 catgactcttatcaatcttagcatccct 312  Q
    ||    ||||||| ||||||||||||||    
T  23588104 cactgttcttatccatcttagcatccct 23588077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 9336413 - 9336356
Alignment:
Q  134 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 191  Q
    |||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  9336413 ctcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatac 9336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 35132129 - 35132249
Alignment:
Q  161 ccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatc 260  Q
    |||||||| ||||| ||||| |||||||| |||||||| | ||| ||||| ||||| || |  ||||| ||||| || ||||| |||||||| |  || |    
T  35132129 ccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagacc 35132228  T
Q  261 caccaacaagaacaacttcat 281  Q
    | |||||||||||||| ||||    
T  35132229 ctccaacaagaacaacatcat 35132249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 8017963 - 8017783
Alignment:
Q  106 atcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctct 205  Q
    |||||||||||||||||  |||||||| |||||||| |||||||| ||||| ||||||||||||||||| || || ||||| ||||||||||||||||||    
T  8017963 atcttgaaccttttcattgccttcaccactcaaaattgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctct 8017864  T
Q  206 ttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaaca 286  Q
    || |||||||||||||| ||||| || || |||||||| ||||| || ||||| || |||||||||||||| |||||||||    
T  8017863 ttaccattgaagaaatcttgcaacagttgctgaactttgggaattctagttgaaccgccaacaagaacaacatcatgaaca 8017783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 285
Target Start/End: Original strand, 8102285 - 8102464
Alignment:
Q  106 atcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctct 205  Q
    |||||||||||| ||||  |||||||| ||||| || || ||||||||||| ||||||||||||||||| || || ||||| || || ||||| |||||     
T  8102285 atcttgaaccttctcatttccttcaccactcaagatagcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctcc 8102384  T
Q  206 ttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaac 285  Q
    || ||||||||||| || ||||| || || |||||||| |||||||| ||||| ||||||||||||||||| ||||||||    
T  8102385 ttaccattgaagaagtcttgcaacagttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcatgaac 8102464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 17259902 - 17260034
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||||| |  || || || ||||||||||||||||| || || || ||||| ||||    
T  17259902 tgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaa 17260001  T
Q  249 tccttgttgatccaccaacaagaacaacttcat 281  Q
    |||| |  |||||||||||||| ||||| ||||    
T  17260002 tcctagaagatccaccaacaaggacaacatcat 17260034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 39985259 - 39985407
Alignment:
Q  101 agaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaa 200  Q
    |||||||| |||||||| ||||  || ||||| ||||| || || || ||||||||||||||||| |||||||| |||||||| || || |||||||| |    
T  39985259 agaagatcctgaaccttctcattgccctcaccactcaagatagcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcata 39985358  T
Q  201 gctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 249  Q
    |||| || || || |||||||| |||||||| |||||||| ||||||||    
T  39985359 gctcctttccgttaaagaaatcttgcaaaagttgttgaacctttggaat 39985407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 17267600 - 17267760
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |  || ||||| |||||||| | |||||| || || || ||||| ||||    
T  17267600 tgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaagttctgcaatagttgctgcactttcggaa 17267699  T
Q  249 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatc 309  Q
    |||| |  || ||||||||||| ||||| |||| |||    ||||| ||||||||||||||    
T  17267700 tcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatc 17267760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 7878240 - 7878108
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||  ||||||  || ||||| || || || |||||||| ||||| || |||||  |||    
T  7878240 tgaacagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaa 7878141  T
Q  249 tccttgttgatccaccaacaagaacaacttcat 281  Q
    |||| | ||||||||||||||| ||||| ||||    
T  7878140 tcctagatgatccaccaacaagtacaacatcat 7878108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 8581361 - 8581493
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||||| |  || ||||| | ||| || ||||| || ||||||   ||||| ||||    
T  8581361 tgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaa 8581460  T
Q  249 tccttgttgatccaccaacaagaacaacttcat 281  Q
    |||| |  || ||||||||||| ||||| ||||    
T  8581461 tcctagaagaaccaccaacaaggacaacatcat 8581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 8537700 - 8537734
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggtt 186  Q
    |||||||||||||||||||||||||||||||||||    
T  8537700 acagcagcaccataagcaacagcttcatcagggtt 8537734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 8545297 - 8545343
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggttaatactcttgca 198  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  8545297 acagctgcaccataagcaacagcctcatcagggttaatgctcttgca 8545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 8575984 - 8576119
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 245  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |  || ||||| ||||| |  ||||| || ||||||   ||||| |    
T  8575984 gcttggacaacagcaccataagcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttag 8576083  T
Q  246 gaatccttgttgatccaccaacaagaacaacttcat 281  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8576084 gaatcctagaagaaccaccaacaaggacaacatcat 8576119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 8590296 - 8590431
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 245  Q
    ||||||||||| ||||||||||||||||| ||||| || || || || ||| |||| || |||||  | || || || ||||| ||||| || ||||| |    
T  8590296 gcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgg 8590395  T
Q  246 gaatccttgttgatccaccaacaagaacaacttcat 281  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8590396 gaatcctagaagaaccaccaacaagtacaacatcat 8590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 8659021 - 8659071
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttg 196  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||| |||||||||    
T  8659021 gcttgaagagctgcaccataagcaacagcctcatctgggttgatactcttg 8659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 10494896 - 10494839
Alignment:
Q  134 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 191  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  10494896 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 10494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 13333890 - 13333833
Alignment:
Q  134 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 191  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  13333890 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 13333833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 27831379 - 27831250
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 251  Q
    ||||| |||||| |||||||||| |||||||| || || |||||||| |  || || || ||||| || |||  ||| ||||| || ||||| |||||||    
T  27831379 acagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaatcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatcc 27831280  T
Q  252 ttgttgatccaccaacaagaacaacttcat 281  Q
    |||  || ||||||||||| ||||| ||||    
T  27831279 ttgaagagccaccaacaaggacaacatcat 27831250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 29582345 - 29582248
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 249  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || ||||| ||||| || || ||||| ||||| || ||||| |||||    
T  29582345 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaat 29582248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 12245916 - 12245787
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 245  Q
    ||||||||||| || |||||||||||||| || ||||||||||| |||||||| |  || ||||| ||||| || ||||| || |||||||| ||||| |    
T  12245916 gcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgg 12245817  T
Q  246 gaatccttgttgatccaccaacaagaacaa 275  Q
    ||||||| |  |||||||||||||| ||||    
T  12245816 gaatcctagaagatccaccaacaagtacaa 12245787  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 11999066 - 11999200
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 245  Q
    ||||||||||| || |||||||| ||||| |||||||||||||| |||||||| | ||| ||||| ||||| || || || || |||||||| || ||||    
T  11999066 gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggac-tttg 11999164  T
Q  246 gaatccttgttgatccaccaacaagaacaacttcat 281  Q
    | ||||| |  |||||||||||||| ||||| ||||    
T  11999165 ggatcctagaagatccaccaacaagtacaacatcat 11999200  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 12234351 - 12234482
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||||||| ||  |||||||||| || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||| ||||    
T  12234351 tgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaa 12234449  T
Q  249 tccttgttgatccaccaacaagaacaacttcat 281  Q
    |||| |  || || |||| ||| ||||||||||    
T  12234450 tcctagaggacccgccaataaggacaacttcat 12234482  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 281
Target Start/End: Complemental strand, 16658039 - 16657892
Alignment:
Q  134 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 233  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| |  || || || ||||| || || ||||| || |    
T  16658039 ctcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagat 16657940  T
Q  234 gttgaacttttggaatccttgttgatccaccaacaagaacaacttcat 281  Q
      || ||||| |||||||| | ||| ||||| ||||||||||| ||||    
T  16657939 cctgcactttgggaatcctagatgagccacccacaagaacaacgtcat 16657892  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 16662502 - 16662429
Alignment:
Q  146 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaa 219  Q
    ||||| ||||| || |||||||||||||| ||||||||||| || |||||||| | ||| ||||||||||||||    
T  16662502 gcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaa 16662429  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 5446282 - 5446218
Alignment:
Q  143 gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt 207  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| |||||||    
T  5446282 gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt 5446218  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 17648542 - 17648442
Alignment:
Q  155 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttg 254  Q
    ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || || |  |||||||||||||| || |||||||| |||||||| ||||    
T  17648542 gcagcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttg 17648443  T
Q  255 t 255  Q
    |    
T  17648442 t 17648442  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 282
Target Start/End: Complemental strand, 17717185 - 17717061
Alignment:
Q  158 gcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttg 257  Q
    |||||||| |||||||| ||||| || ||||| |||||||| ||||| || |  || |||||||||||||| || |||||||| |||||||| || || |    
T  17717185 gcaccatatgcaacagcctcatcgggattaatgctcttgcatagctcctttctgttaaagaaatcctgcaatagttgttgaacctttggaattctggtag 17717086  T
Q  258 atccaccaacaagaacaacttcatg 282  Q
    | || || ||||| ||||| |||||    
T  17717085 aacctcctacaaggacaacatcatg 17717061  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 43625058 - 43625173
Alignment:
Q  134 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 233  Q
    |||||||| || || || ||||| ||||||||||||||||| ||||||||||| || || | |||    || ||||| ||||| || |||||||| ||||    
T  43625058 ctcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgctttcgcatgattccttccccttgaaaaactcctgcaacagct 43625157  T
Q  234 gttgaacttttggaat 249  Q
    |||  |||||||||||    
T  43625158 gttttacttttggaat 43625173  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 17718452 - 17718358
Alignment:
Q  155 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 249  Q
    ||||||||||| |||||||| ||||| || ||||| |||||||| || || || || || |||| ||||||| | || |||||||| ||||||||    
T  17718452 gcagcaccatatgcaacagcctcatcgggattaatgctcttgcatagatcctttccgttaaagacatcctgccatagttgttgaacctttggaat 17718358  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 198  Q
    |||||||| || |||||||||||||| |||||||| ||||| ||||||||    
T  7541887 tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca 7541936  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 198  Q
    |||||||| || |||||||| |||||||||||||||||||| || |||||    
T  14703069 tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca 14703118  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 12528165 - 12528325
Alignment:
Q  149 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 248  Q
    |||||||| ||||||||||||||||| ||||||||||| || |||||| | | ||| || || ||||| || |||||||| ||||| |  ||||| ||||    
T  12528165 tgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaa 12528264  T
Q  249 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatc 309  Q
    |||| |  || ||||||||||| ||||  ||||  |||  |||||| || |||||||||||    
T  12528265 tcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatc 12528325  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 42325309 - 42325181
Alignment:
Q  147 cttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttgg 246  Q
    |||| |||||||||||| | ||||| |||||||||||||| |  | ||||    |||| || ||||  ||| |||||| |||||| ||||| || |||||    
T  42325309 cttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctttccatcaaagtaatccttcaaaagttgttgtacctttgg 42325210  T
Q  247 aatccttgttgatccaccaacaagaacaa 275  Q
    |||||||||   |||||||||||||||||    
T  42325209 aatccttgtgcttccaccaacaagaacaa 42325181  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 43744549 - 43744610
Alignment:
Q  221 tcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatg 282  Q
    |||||||| || ||||| |||||||||||||| |  || ||||||||||||||||| |||||    
T  43744549 tcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 43744610  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 4679081 - 4679015
Alignment:
Q  132 cgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 198  Q
    |||||||||| || ||||| | ||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  4679081 cgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgatactcttgca 4679015  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 15594698 - 15594815
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 251  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || || || | ||| ||||||| ||| || ||||| ||||| |||||||    
T  15594698 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcc 15594797  T
Q  252 ttgttgatccaccaacaa 269  Q
    | |  || ||||||||||    
T  15594798 tagaagacccaccaacaa 15594815  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 28219582 - 28219625
Alignment:
Q  152 acagcagcaccataagcaacagcttcatcagggttaatactctt 195  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||    
T  28219582 acagctgcaccataagcaacagcctcatcagggttaatgctctt 28219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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