View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0223_low_37 (Length: 321)
Name: NF0223_low_37
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 308
Target Start/End: Complemental strand, 22362638 - 22362335
Alignment:
| Q |
5 |
gatagagagaattttcaccaagaaacaagatggtccaattgtgttcattgatgatgattctcattctcctagtctatggaccaaattccttgaactgaag |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362638 |
gatagagagaatcttcaccaagaaacaagatggtccaattgtgttcattgatgatgattctcattctcctagtctatggaccaaattccttgaactgaag |
22362539 |
T |
|
| Q |
105 |
aagaataacaaagtgcaacaccttaagacattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggagaaagctcatgaaaa |
204 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22362538 |
aagaatgacaaagtgcaacaccttaagacattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggaggaagctcatgaaaa |
22362439 |
T |
|
| Q |
205 |
atgtattaggaaaagagaagaagaagatagagaataaagacagagctgattcccctgactcttacaatctttatgatagaaaacctgatttccgaaatgc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22362438 |
atgtattaggaaaagagaagaagaagatagagaataaagacagagctgattcccctgactcttacaatctctatgatagaaaacctgatttccgaaatgc |
22362339 |
T |
|
| Q |
305 |
atat |
308 |
Q |
| |
|
|||| |
|
|
| T |
22362338 |
atat |
22362335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2000 times since January 2019
Visitors: 2396