View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_38 (Length: 285)
Name: NF0223_low_38
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 38629638 - 38629857
Alignment:
| Q |
11 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
110 |
Q |
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| T |
38629638 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
38629737 |
T |
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| Q |
111 |
tcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatgcagtagaactagtccgattgcaagaac |
210 |
Q |
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| T |
38629738 |
tcaatatttactgcctatagatttggttcttatttggtgactaattattcggcagacctcttcaaattgtatgcagtagaactagtctgattgcaagaac |
38629837 |
T |
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| Q |
211 |
atttttacaggaaatacttg |
230 |
Q |
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| T |
38629838 |
atttttacaggaaatacttg |
38629857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 38696616 - 38696449
Alignment:
| Q |
14 |
tactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact---cttcgaattatatatgttggattggatc |
107 |
Q |
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||||||| ||||||||||| ||||||||| |||| ||||||||| ||| ||||| |||||||||||| ||| ||||||| | |||||||| | |
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| T |
38696616 |
tactctttatcaattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattactactctttgaattatgtctgttggat-----c |
38696522 |
T |
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| Q |
108 |
atttcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatg |
183 |
Q |
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| T |
38696521 |
ctttcaaaatttactccttacagatttggttgtt---tgatgacttattatccagttgacctcttcaaattgtatg |
38696449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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