View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0223_low_4 (Length: 612)
Name: NF0223_low_4
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0223_low_4
Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 29 - 559
Target Start/End: Complemental strand, 51858617 - 51858087
Alignment:
Q
29
acttaaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc
128
Q
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
51858617
acttaatggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc
51858518
T
Q
129
atcatcctctataatcgaattgttatatccaatattggaaacatagaattttccaacttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa
228
Q
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
51858517
atcatcctctaaaatcgaattgttatatccaatattggaaacacagaattttccatcttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa
51858418
T
Q
229
aacaacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaa
328
Q
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
T
51858417
aacaacactactttataaacaccattaaggggctcaaatgcaattaaaccacgcccatatctagaaaaactgagagtatgtgcttgaaacatttccttaa
51858318
T
Q
329
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagt
428
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
51858317
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagt
51858218
T
Q
429
tggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag
528
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
51858217
tggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagag
51858118
T
Q
529
cgccataaagcacagacactacggaatcgaa
559
Q
||||||||||||||| |||||||||||||||
T
51858117
cgccataaagcacaggcactacggaatcgaa
51858087
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 425
Target Start/End: Original strand, 34864872 - 34865268
Alignment:
Q
29
acttaaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctc
128
Q
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||| |||||||||||||||||| |
T
34864872
acttaaaggatgaacaattgatccagaaaataattccacttttatccacaacataaacctttcccatataaaggattatgtcattatagattctattccc
34864971
T
Q
129
atcatcctctataatcgaattgttatatccaatattggaaacatagaattttccaacttcatgaaaggcaaaggccatttgaccgagaccctcgacagaa
228
Q
||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| ||| ||||| |||||| |||| |||||| ||||||| ||||||
T
34864972
atcatccactataatcaaattgttatatccaatattggacacacgcaattttccatcttgatgaagagcaaagaccatctgaccgggaccctcaacagaa
34865071
T
Q
229
aacaacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaa
328
Q
||||||||||||||||||||| || |||||||||||||| ||||||| ||| |||| |||||||||| ||| |||| ||||||||||| |||| |||
T
34865072
aacaacactactttataaacatcagaaaggggctcaaatgcaattaaatcacctccatctctagaaaaattgatagtatatgcttgaaacaattccataa
34865171
T
Q
329
ctcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga
425
Q
||||||||||||||||||||||||||||||| ||||| |||||||| || ||| ||||||| | || |||||||||||||||||||| |||||||||
T
34865172
ctcgtaagttcatgaaatctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga
34865268
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 561
Target Start/End: Original strand, 34865308 - 34865455
Alignment:
Q
426
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatga------------aaagga
513
Q
|||||| || ||||||||| ||||||||||||||||||||||| |||||||||||| || || |||| ||||| ||||| ||||||
T
34865308
agttggaaataatggttgtaggcgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggagaaggaaaagga
34865407
T
Q
514
ggggaaagaatagagcgccataaagcacagacactacggaatcgaaga
561
Q
|||| ||||||||||||| |||||||||||||||||||||||||||||
T
34865408
gggggaagaatagagcgcaataaagcacagacactacggaatcgaaga
34865455
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 34145737 - 34145598
Alignment:
Q
32
taaaggatgaacaattgatccagaaaataattccactcttatcgataacataaatcttccccatataaaggattatatcattatagattctattctcatc
131
Q
|||||||||||||||| |||| |||||||||||| | |||| | |||||||| |||||||||||| ||||||| ||||| ||| | |||||| ||||
T
34145737
taaaggatgaacaattaatccgaaaaataattccatttgtatccacaacataaaccttccccatatagaggattaaatcatcatatactctattaccatc
34145638
T
Q
132
atcctctataatcgaattgttatatccaatattggaaaca
171
Q
| |||| ||| ||||||||||||||| |||| |||||
T
34145637
ccctactattatcaaattgttatatccaacattgcaaaca
34145598
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 34145460 - 34145347
Alignment:
Q
309
tgcttgaaacatttccttaactcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgat-tgttagtcaaaatatctaagtgacg
407
Q
||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||||||| ||| ||| |||||||||| | ||||||||||||
T
34145460
tgcttgaaacaattctcttactcgcaagttcatgaaatctaacacgttgaatgggtatgtgtgtgttatg-gatgtgttagtcaagacatctaagtgacg
34145362
T
Q
408
aagtttgctagattt
422
Q
|| ||| | ||||||
T
34145361
aaattttccagattt
34145347
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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