View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_41 (Length: 267)
Name: NF0223_low_41
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_41 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 2830595 - 2830358
Alignment:
| Q |
30 |
ttaactgcgtccgaaacacacatgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattctt |
129 |
Q |
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| T |
2830595 |
ttaactgcgtccgaaacacacatgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattctt |
2830496 |
T |
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| Q |
130 |
cctgaaattcactcaacttggcttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830495 |
cctgaaattcactcaacttggcttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaag |
2830396 |
T |
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| Q |
230 |
aaacacgattgatggtcgaatttgttattcacgtacat |
267 |
Q |
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| T |
2830395 |
aaacacgattgatggtcgaatttgttattcacgtacat |
2830358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 2789341 - 2789104
Alignment:
| Q |
30 |
ttaactgcgtccgaaacacacatgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattctt |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789341 |
ttaactgcgtccaaaacacacatgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattctt |
2789242 |
T |
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| Q |
130 |
cctgaaattcactcaacttggcttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaag |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2789241 |
cctgaaattcactcaacttggcttcttctttagcagcggcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaag |
2789142 |
T |
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| Q |
230 |
aaacacgattgatggtcgaatttgttattcacgtacat |
267 |
Q |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
2789141 |
aaacacgattgatggtcgaatttgttattcatgtacat |
2789104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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