View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0223_low_45 (Length: 257)

Name: NF0223_low_45

Description: NF0223

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0223_low_45

[»] chr4 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 107; E-Value: 1e-53

Query Start/End: Original strand, 85 - 249

Target Start/End: Complemental strand, 43904366 - 43904205

Alignment:

Q	85	agccagccttgaccctccaatataattagtaaagctaaaacccactctcattttagacaaaacaaaaccaaaataaactcttattctgttcaagttcaag	184	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43904366	agccagccttgaccctccaatataattagtaaagctaaaacccactctcattttagacaaaacaaaaccaaaataaactcttattctgttcaagttcaag	43904267	T

Q	185	aaaagccnnnnnnnnnnnnnncagcatgctttagta-ttgtactttaatttaaccgaacctatgct	249	Q
		\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43904266	aaaagac----aaaaaaaaaacagcatgctttagtatttgtactttaatttaaccgaacctatgct	43904205	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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