View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_46 (Length: 256)
Name: NF0223_low_46
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 41709568 - 41709341
Alignment:
| Q |
29 |
acaatcatggaattcgatcatcatattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtattcg |
128 |
Q |
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| T |
41709568 |
acaatgatggaattcgatcatcaaattatagattagttcctaatcttagcccactccactgagcagatctactcattgctatagtgaaattttgtattcg |
41709469 |
T |
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| Q |
129 |
ttatattggtgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgaaatg |
228 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41709468 |
atatattggtgtcggaactgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctatactgaacacgatatg |
41709369 |
T |
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| Q |
229 |
ggtccagttttctacactgatatgggtg |
256 |
Q |
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| T |
41709368 |
ggtccagttttctacactaatatgggtg |
41709341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 14111485 - 14111682
Alignment:
| Q |
29 |
acaatcatggaattcgatcatcatattatagattagttcctaatcttagcccactccact-------------gagcagatctactcattgctatagtga |
115 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| | ||||| |||||||||| ||||||||| |
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| T |
14111485 |
acaatcatggaattcgatcatcatattataaatgagttcataatcttagcccactccagtcccattttgggtggagcaaatctactcatacctatagtga |
14111584 |
T |
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| Q |
116 |
aattttgtattcgttatattggtgtcggaaccgcagaaaattgtaacacgggcatctgatattggacaagcacgtcatacaagcgttcagttttctat |
213 |
Q |
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| T |
14111585 |
aattttgtatttgttgtattggggtcggaacctcataaaattgtaacacaggcatctgatattggataagcacatcatacaagcgttcagttttctat |
14111682 |
T |
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