View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_49 (Length: 251)
Name: NF0223_low_49
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39360606 - 39360365
Alignment:
| Q |
1 |
ttcttctgatagttttgttgatgatatagaggaagcttctgtggtcgaatcggtggaggattattattgtagcgactagtagcatgaatggtatattcat |
100 |
Q |
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| T |
39360606 |
ttcttctgatagtgttgttgatgatatagaggaagcttctgtggtcgaatcggtggaggattattattgtagcgacgagtagcatgaatggtatattcat |
39360507 |
T |
|
| Q |
101 |
catcttcgttaggaaaattaaccttagcttttttgccacggatttttcgagcttctttgtcgtaagctctagcagcttcttcagcagtgttgaatgtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360506 |
catcttcgttaggaaaattaaccttagcttttttgccacggatttttcgagcttctttgtcgtaagctctagcagcttcttcagcagtgttgaatgtacc |
39360407 |
T |
|
| Q |
201 |
aagccaaacacgaactccttttcttggatcacgaatctctgc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39360406 |
aagccaaacacgaactccttttcttggatcacgaatctctgc |
39360365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 32986384 - 32986341
Alignment:
| Q |
163 |
taagctctagcagcttcttcagcagtgttgaatgtaccaagcca |
206 |
Q |
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| T |
32986384 |
taagctcttgcagcttcttcagcagtgttgaaagtgccaagcca |
32986341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 45437477 - 45437353
Alignment:
| Q |
115 |
aaattaaccttagcttttttgccacggatttttcgagcttctttgtcgtaagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaa |
214 |
Q |
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| T |
45437477 |
aaattcaccttggctttcttgccacggattctcctagcttcagcatcgtaggctcttgcagcttcttcagcagtgttgaaagttccgagccaaacacgaa |
45437378 |
T |
|
| Q |
215 |
ctccttttcttggatcacgaatctc |
239 |
Q |
| |
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|||||||||| || ||||| ||||| |
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| T |
45437377 |
ctccttttctcgggtcacggatctc |
45437353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 8111424 - 8111548
Alignment:
| Q |
115 |
aaattaaccttagcttttttgccacggatttttcgagcttctttgtcgtaagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaa |
214 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| | | |||||| || |||||||| ||||||||||||||||||||||| || || ||||| ||||| | |
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| T |
8111424 |
aaattcaccttggctttattgccacggattctcctagcttcagcatcataagctcttgcagcttcttcagcagtgttgaaagttccgagccagacacgga |
8111523 |
T |
|
| Q |
215 |
ctccttttcttggatcacgaatctc |
239 |
Q |
| |
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||||||| ||||| ||||| ||||| |
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|
| T |
8111524 |
ctcctttccttgggtcacggatctc |
8111548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 38809769 - 38809714
Alignment:
| Q |
163 |
taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaactcc |
218 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| ||| |||| |
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|
| T |
38809769 |
taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctcc |
38809714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 38822718 - 38822672
Alignment:
| Q |
163 |
taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaac |
209 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
38822718 |
taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaac |
38822672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33721103 - 33721045
Alignment:
| Q |
157 |
ttgtcgtaagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaac |
215 |
Q |
| |
|
||||||||||||||||||||||| || || ||| | || || ||||||||||||||||| |
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| T |
33721103 |
ttgtcgtaagctctagcagcttcctccgccgtggtaaaggttccaagccaaacacgaac |
33721045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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