View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0223_low_51 (Length: 251)

Name: NF0223_low_51
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0223_low_51
NF0223_low_51
[»] chr7 (5 HSPs)
chr7 (29-251)||(38342400-38342622)
chr7 (31-251)||(40617175-40617395)
chr7 (31-248)||(27854319-27854536)
chr7 (29-148)||(37137059-37137178)
chr7 (194-245)||(35515730-35515781)
[»] chr8 (1 HSPs)
chr8 (29-251)||(7179471-7179693)
[»] chr3 (6 HSPs)
chr3 (31-251)||(9859184-9859404)
chr3 (29-251)||(29542828-29543050)
chr3 (29-251)||(53877322-53877544)
chr3 (29-251)||(6925384-6925609)
chr3 (29-159)||(42806822-42806952)
chr3 (29-159)||(22533438-22533568)
[»] chr6 (3 HSPs)
chr6 (31-251)||(32533505-32533725)
chr6 (179-251)||(29321765-29321837)
chr6 (43-83)||(18016341-18016381)
[»] chr2 (6 HSPs)
chr2 (31-251)||(841989-842209)
chr2 (42-159)||(24739266-24739383)
chr2 (192-244)||(40427373-40427425)
chr2 (29-83)||(1998302-1998356)
chr2 (203-251)||(21579108-21579156)
chr2 (194-246)||(24739418-24739470)
[»] chr5 (4 HSPs)
chr5 (31-246)||(7961590-7961805)
chr5 (31-149)||(32018527-32018645)
chr5 (194-251)||(22936557-22936614)
chr5 (195-248)||(32018428-32018481)
[»] chr4 (5 HSPs)
chr4 (29-251)||(54871259-54871481)
chr4 (200-245)||(18921519-18921564)
chr4 (29-83)||(18921348-18921402)
chr4 (194-251)||(13157037-13157094)
chr4 (46-82)||(40155388-40155424)
[»] chr1 (4 HSPs)
chr1 (46-81)||(17127937-17127972)
chr1 (202-238)||(3937840-3937876)
chr1 (43-83)||(12687639-12687679)
chr1 (193-233)||(40231753-40231793)


Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 38342400 - 38342622
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38342400 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaacgcggatccttcttcttgtta 38342499  T
Q  129 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  38342500 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgatggcaacgccttctttttggcataaggacgttccgttggaggtg 38342599  T
Q  229 gtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||||||||    
T  38342600 gtgctttttgtgtggcgtctgtt 38342622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 40617395 - 40617175
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||||||  ||||||| |  || |||||||||| |||||||||||||||||| |    
T  40617395 gagtcggtaggggagcttaggcttttactacaaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgtggatccttcttcttgttata 40617296  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggt 230  Q
    ||||||| |||||||||||||| |||||| | ||||| || || |||||||||  |  | |||||||||||||||||| ||| || || |||||||||||    
T  40617295 cagttcaaagtgcatacaatactctcattgcgcaggttcatgttgataatgtggtgctatcgccttctttttggcatagggatgtccctttgaaggtggt 40617196  T
Q  231 gctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||||||    
T  40617195 gctttttgtgtggcgtctgtt 40617175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 27854319 - 27854536
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||  | |||||||||| ||||||| || | |||||||| |    
T  27854319 gagttggtagaggagcttaggcttttacttcaaaatgtttcttttcaggttcacagaaaggatggttggaagtggagtgcggattctacgtcttgttata 27854418  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataat---gtgaaggcaacgccttctttttggcataaggacgttccgttgaaggt 227  Q
    ||||||| ||||||  ||| || |||||  | ||||| ||  | ||| ||   |||| |    || ||||||| ||||||||||| || || ||||||||    
T  27854419 cagttcaaagtgcaatcaaaactctcatcgcgcaggttcatattgatcattcagtgatg---tcgacttctttgtggcataaggatgtccccttgaaggt 27854515  T
Q  228 ggtgctttttgtgtggcgtct 248  Q
    |||||||||||||||||||||    
T  27854516 ggtgctttttgtgtggcgtct 27854536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 37137059 - 37137178
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||||||||  || |||||||||||||||||||||||||||||| |||||||   ||||||    ||||| ||| |||||||||| |||| | ||||    
T  37137059 aggagtcggtaggagaacttaggcttttacttcaaaatgtttctttataggttcaccaaaaggatgattggaaatggcatgcggatccatcttatagtta 37137158  T
Q  129 cacagttcagagtgcataca 148  Q
     |||||||  ||||||||||    
T  37137159 tacagttcgtagtgcataca 37137178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 35515730 - 35515781
Alignment:
Q  194 cttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcg 245  Q
    ||||| |||||||||||||| |||| |||||||||||||| ||||| |||||    
T  35515730 cttctctttggcataaggacattcctttgaaggtggtgctatttgtttggcg 35515781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 7179693 - 7179471
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| | |||||||||||| | |||||||||||    
T  7179693 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagcaaaaggacaggtggcattggaatgcggattcctcttcttgtta 7179594  T
Q  129 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtg 228  Q
    ||||||||||||||| ||||||||||||||| | ||||| || || ||| |||||| || ||| |||||| |||||||||||||||||||||||||||||    
T  7179593 cacagttcagagtgcttacaatacgctcattgcccaggttcaggttgatcatgtgacggaaacaccttctctttggcataaggacgttccgttgaaggtg 7179494  T
Q  229 gtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||| ||||    
T  7179493 gtgctttttgtgtggcgtttgtt 7179471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 9859404 - 9859184
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||| || |   |||||| |  ||||||||||| ||||||||||||||||||||||    
T  9859404 gagtcggtaggggaacttagacttttacttcaaaatgtttctttacagatttacaaaaaggatatttggaagtggaacgcggatccttcttcttgttaca 9859305  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggt 230  Q
    ||||||| ||||||||||||||  ||||| |||||||  | || |||||||||  ||||||||||||||||||||||||||||||||| ||||| |||||    
T  9859304 cagttcaaagtgcatacaatactttcattgctcaggtttatgttgataatgtggtggcaacgccttctttttggcataaggacgttcctttgaaagtggt 9859205  T
Q  231 gctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||||||    
T  9859204 gctttttgtgtggcgtctgtt 9859184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 29543050 - 29542828
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||  | |||||| ||||   ||| | ||||||| ||||||||||||    
T  29543050 aggagtctgtagcggagcttaggcttttacttcacaatgttactttacaggttcagcaagaggacaagtggctatggcaggcggatcattcttcttgtta 29542951  T
Q  129 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtg 228  Q
    ||||||||||||||| |||||||| |||||| | ||||| || || ||| |||||| |  |||| ||||||||||||| ||||||||||| |||||||||    
T  29542950 cacagttcagagtgcttacaatacactcattgcccaggttcaggtggatcatgtgacgaaaacgacttctttttggcacaaggacgttccattgaaggtg 29542851  T
Q  229 gtgctttttgtgtggcgtctgtt 251  Q
    ||| | |||||||||||| ||||    
T  29542850 gtgttgtttgtgtggcgtatgtt 29542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 53877544 - 53877322
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||   |||||||||||| | ||||| || ||| ||||||||| |||    
T  53877544 aggagtcggtggtggagcttaggcttttacttcacaatgtttctttacaggctcagcagaaggacaggtggcattggaaggctgattcttcttcttctta 53877445  T
Q  129 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtg 228  Q
    ||||||||||||||||| ||| | | |  |  ||||||  |   | ||  | ||||    || ||||||||||||||||||||||||| |||||||||||    
T  53877444 cacagttcagagtgcatgcaaaatgattctagctcaggctccgttagaccaggtgacaaaaatgccttctttttggcataaggacgtttcgttgaaggtg 53877345  T
Q  229 gtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||| ||||    
T  53877344 gtgctttttgtgtggcgtttgtt 53877322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 6925384 - 6925609
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcgga---tccttcttcttg 125  Q
    |||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||  |||||||| |||||  ||||| || ||   | |||||||||     
T  6925384 aggagtcggtagcggaacttacgcttttacttcataatgtttctttacaggctcagcaaaaggacatgtggatttggaaggctgattcttcttcttcttc 6925483  T
Q  126 ttacacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaag 225  Q
    |||||||||||||||||||||||| | | | ||  ||||||  |   | ||| | ||||  |  | ||| |||| ||| |||||||||||| ||||||||    
T  6925484 ttacacagttcagagtgcatacaaaatgattatgactcaggctccgttagatcaggtgacagatatgccatcttgttgacataaggacgtttcgttgaag 6925583  T
Q  226 gtggtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||| |||||| ||||    
T  6925584 gtggtgctttttgtatggcgtttgtt 6925609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 42806952 - 42806822
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||| |||| ||||||||||||||||||||| ||||||  ||||||||||||   ||| |||||||||   ||| | || |||| ||||||||||||    
T  42806952 aggagtctgtagtggagcttaggcttttacttcacaatgttattttacaggttcatcaaaaagacaggtggctatggcaggcagatcgttcttcttgtta 42806853  T
Q  129 cacagttcagagtgcatacaatacgctcatt 159  Q
     || ||||||||||| |||||||| ||||||    
T  42806852 tactgttcagagtgcttacaatacactcatt 42806822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 22533438 - 22533568
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    ||||||| ||||  ||||||||||||||| |||| ||||||  ||||||||||||   ||| |||||||||   ||| | ||||||| ||||||||||||    
T  22533438 aggagtctgtagtagagcttaggcttttagttcacaatgttattttacaggttcatcaaaacgacaggtggctatggcaggcggatcattcttcttgtta 22533537  T
Q  129 cacagttcagagtgcatacaatacgctcatt 159  Q
     || ||||| ||||| |||||||| ||||||    
T  22533538 tactgttcaaagtgcttacaatacactcatt 22533568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 32533725 - 32533505
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||| |  || ||||||||||| |||||||||||||| || |    
T  32533725 gagtcggtaggggagcttaggcttttacttcaaaatgtttcttttcaggttcacagaaaggatatttgaaagtggaatgcagatccttcttcttgctata 32533626  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggt 230  Q
    ||||||| ||||||||||||||  |||||   ||||| || || |||||||||  |||| |||||||||| ||||||||||||||| | |||||||||||    
T  32533625 cagttcacagtgcatacaatactttcattgtgcaggttcatgttgataatgtggtggcatcgccttctttatggcataaggacgtttctttgaaggtggt 32533526  T
Q  231 gctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||||||    
T  32533525 gctttttgtgtggcgtctgtt 32533505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 29321837 - 29321765
Alignment:
Q  179 atgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtctgtt 251  Q
    |||||| || |||| ||||| |||||||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  29321837 atgtgacggaaacgacttctatttggcataaggacgttccgatgaaggtggtgttgtttgtgtggcgtatgtt 29321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 18016381 - 18016341
Alignment:
Q  43 gagcttaggcttttacttcaaaatgtttctttacaggttca 83  Q
    ||||||| ||||||||| ||| |||||||||||||||||||    
T  18016381 gagcttacgcttttactgcaacatgtttctttacaggttca 18016341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 842209 - 841989
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||  ||||||| |  |||||||||||||||||||||||||||||||| |    
T  842209 gagtcggtaggggagcttaggcttttacttcaaaatgtttcttttcaggttcacagaaaggatatttggaagtggaatgcggatccttcttcttgttata 842110  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggt 230  Q
    ||||||| |||||||||||||| |||| | | || || ||  | || ||||    |  | ||||||||||||||||||| || || || |||||||||||    
T  842109 cagttcaaagtgcatacaatactctcactgcgcatgttcatattgacaatgcagtgttatcgccttctttttggcataaagatgtccctttgaaggtggt 842010  T
Q  231 gctttttgtgtggcgtctgtt 251  Q
    |||||||| ||||||||||||    
T  842009 gctttttgcgtggcgtctgtt 841989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 24739266 - 24739383
Alignment:
Q  42 ggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttacacagttcagagt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||  | |||||||||| ||||||| || | ||||| || |||||||| |||    
T  24739266 ggagcttaggcttttacttcaaaatgtttctttacaggttcacagaaaggatggttggaagtggagtgcggattctacgtcttgctatacagttcaaagt 24739365  T
Q  142 gcatacaatacgctcatt 159  Q
    |||||||| || ||||||    
T  24739366 gcatacaaaactctcatt 24739383  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 40427425 - 40427373
Alignment:
Q  192 gccttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggc 244  Q
    ||||||| |||||||||| || || || |||||||||||||||||||||||||    
T  40427425 gccttctatttggcataaagatgtccctttgaaggtggtgctttttgtgtggc 40427373  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 1998356 - 1998302
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttca 83  Q
    |||||||| ||| ||| |||| |||||||||||| ||||| ||||||||||||||    
T  1998356 aggagtcgttaggggaacttatgcttttacttcataatgtctctttacaggttca 1998302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 21579156 - 21579108
Alignment:
Q  203 ggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||| ||||||||  ||||||||| ||||||| ||||    
T  21579156 ggcataaggacgttcctttgaaggtcctgctttttgcgtggcgtttgtt 21579108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 24739418 - 24739470
Alignment:
Q  194 cttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcgt 246  Q
    ||||||| ||||||||||| || || |||||||| |||||||||| |||||||    
T  24739418 cttctttgtggcataaggatgtccccttgaaggtagtgctttttgcgtggcgt 24739470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 7961805 - 7961590
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||   ||||||    ||||||||||| ||||||||| |||| ||||| |    
T  7961805 gagtcggtaggggagcttaggcttttacttcaaaatgtttcttttcaggttcacataaaggatttttggaagtggaacgcggatcctacttcctgttata 7961706  T
Q  131 cagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtggt 230  Q
    ||||  | |||||| ||| ||| |||||  | ||||| || || |||||||||  |     ||||||||||||||||||||| || || |||||||||||    
T  7961705 cagtaaaaagtgcagacactactctcatggcgcaggttcatgttgataatgtggtgcgtttgccttctttttggcataaggatgtccctttgaaggtggt 7961606  T
Q  231 gctttttgtgtggcgt 246  Q
    |||||||| |||||||    
T  7961605 gctttttgcgtggcgt 7961590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 32018645 - 32018527
Alignment:
Q  31 gagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgttaca 130  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||   ||| ||  | ||||| | || ||||||||||   |||||||| |    
T  32018645 gagttggtaggggagcttaggcttttacttcaaaatgtttcttttcaggttcacaaaaaagatggttggaaatagagtgcggatcctaagtcttgttata 32018546  T
Q  131 cagttcagagtgcatacaa 149  Q
    ||||||| |||||||||||    
T  32018545 cagttcaaagtgcatacaa 32018527  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 22936557 - 22936614
Alignment:
Q  194 cttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtctgtt 251  Q
    ||||||| ||||| ||| ||||||| |||||||||||| ||||||  |||||||||||    
T  22936557 cttctttgtggcacaagaacgttcctttgaaggtggtgatttttgcctggcgtctgtt 22936614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 32018481 - 32018428
Alignment:
Q  195 ttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtct 248  Q
    |||||| ||||| ||||| ||||| |||||||||||||| |||| |||||||||    
T  32018481 ttctttgtggcacaaggaagttcccttgaaggtggtgctatttgcgtggcgtct 32018428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 54871481 - 54871259
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttcagtgaaaggacaggtggaagtggaatgcggatccttcttcttgtta 128  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||||  ||   |||||||||||||   | ||| || ||| ||||||||| |||    
T  54871481 aggagtcggtggtggagcttaggcttttacttcacaatgtttctttacaggcacatcaaaaggacaggtggctttagaaggctgattcttcttcttctta 54871382  T
Q  129 cacagttcagagtgcatacaatacgctcatttctcaggtccaagtcgataatgtgaaggcaacgccttctttttggcataaggacgttccgttgaaggtg 228  Q
    ||||||||||||||| ||||| | | |  |  |||||  ||   | ||  | |||   | || ||||||||||||||| |||||||| ||||||||||||    
T  54871381 cacagttcagagtgcttacaaaatgattctagctcagaccccgttagaccaggtgtcagaaatgccttctttttggcacaaggacgtcccgttgaaggtg 54871282  T
Q  229 gtgctttttgtgtggcgtctgtt 251  Q
    |||||||||||||||||| ||||    
T  54871281 gtgctttttgtgtggcgtttgtt 54871259  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 18921519 - 18921564
Alignment:
Q  200 tttggcataaggacgttccgttgaaggtggtgctttttgtgtggcg 245  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  18921519 tttggcataaagacgttccattgaaggtggtgctttttgtgtggcg 18921564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 18921348 - 18921402
Alignment:
Q  29 aggagtcggtagcggagcttaggcttttacttcaaaatgtttctttacaggttca 83  Q
    |||||||| ||| ||| |||| |||||||||||| ||||||||||||||||||||    
T  18921348 aggagtcgttaggggaacttatgcttttacttcataatgtttctttacaggttca 18921402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 13157037 - 13157094
Alignment:
Q  194 cttctttttggcataaggacgttccgttgaaggtggtgctttttgtgtggcgtctgtt 251  Q
    ||||| ||||||| ||||| ||||| |||||||||||| | |||| ||||||||||||    
T  13157037 cttctctttggcacaaggatgttcccttgaaggtggtgttgtttgcgtggcgtctgtt 13157094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 40155424 - 40155388
Alignment:
Q  46 cttaggcttttacttcaaaatgtttctttacaggttc 82  Q
    |||||||||||||||||||||||| |||| |||||||    
T  40155424 cttaggcttttacttcaaaatgttactttgcaggttc 40155388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 17127937 - 17127972
Alignment:
Q  46 cttaggcttttacttcaaaatgtttctttacaggtt 81  Q
    ||||||||||||||||||||||||||||| ||||||    
T  17127937 cttaggcttttacttcaaaatgtttctttgcaggtt 17127972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 3937840 - 3937876
Alignment:
Q  202 tggcataaggacgttccgttgaaggtggtgctttttg 238  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  3937840 tggcataaggacgttcccttgaaggtggttctttttg 3937876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 12687639 - 12687679
Alignment:
Q  43 gagcttaggcttttacttcaaaatgtttctttacaggttca 83  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  12687639 gagcttacccttttacttcgaaatgtttctttacaggttca 12687679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 40231793 - 40231753
Alignment:
Q  193 ccttctttttggcataaggacgttccgttgaaggtggtgct 233  Q
    |||||| ||||||||||||| ||||| ||||||||||||||    
T  40231793 ccttctctttggcataaggatgttcctttgaaggtggtgct 40231753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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