View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_53 (Length: 250)
Name: NF0223_low_53
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 40145682 - 40145865
Alignment:
| Q |
1 |
tttgaaaggcatgccaagttgattcggtatctgattgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtttaggtgttgtt |
100 |
Q |
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| T |
40145682 |
tttgaaaggcatgccaatttgattcggtatctgattgacatactacatgtgcagaagaacaagccacgcctttgaataaaattcaagtttaggtgttgtt |
40145781 |
T |
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| Q |
101 |
tttaaaaacaatttatacacaacacacatattagatatataaaataagtttttaatctcattaattccttagtttgagtttctc |
184 |
Q |
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| T |
40145782 |
tttaaaaacaatttatacacaacacacatattagatatataaaatatgtttttaatctcattaattccttagtttgagtttctc |
40145865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 40145889 - 40145930
Alignment:
| Q |
207 |
ttgtgtaaccaaaagaactcactcgtcgtctctgctcctcca |
248 |
Q |
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|||||||||||||| |||||||||||||||||| || ||||| |
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| T |
40145889 |
ttgtgtaaccaaaataactcactcgtcgtctcttcttctcca |
40145930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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