View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_54 (Length: 250)
Name: NF0223_low_54
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_54 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 21630693 - 21630469
Alignment:
| Q |
26 |
atcatcttcatcatcgacaacaaaggaaaacatctagcaattagtagttagttagtataattagtatgccaatatcaccggcagctgtgatcatcccatt |
125 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21630693 |
atcatcatcatcatcgacaacaaaggaaaacatctagcaattagtagtaagttagtataattagtatgccaatttcaccggcagctgtgatcatcccatt |
21630594 |
T |
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| Q |
126 |
gggtattctcttcttcgcttctggtctcatcgttaacatcattcaggtcggttctttctcttttcattttaccgaaatcatcnnnnnnnttcatttttta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21630593 |
gggtattctcttcttcgcttctggtctcatcgttaacatcattcaggtcagttctttctcttttcattttaccgaaatcatcataaaaattcatttttta |
21630494 |
T |
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| Q |
226 |
gattcagatttgatgtgcttattgt |
250 |
Q |
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||||||||||||||||| ||||||| |
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| T |
21630493 |
gattcagatttgatgtgattattgt |
21630469 |
T |
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