View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_55 (Length: 249)
Name: NF0223_low_55
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13610067 - 13609829
Alignment:
| Q |
1 |
tttaccattttttccgagataacattgtggacatccttgtggtcccacaacctgttccactttcttggttctttgggtgatttttctttaatgatactcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13610067 |
tttaccattttttccgagataacattgtggacatccttgtggtcccacaacctgttccactttcttggttctttgggtgatttttctttaatgatactcc |
13609968 |
T |
|
| Q |
101 |
tgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacctcccataggttattaatgatttatcaaagagaactcttaagccaatttcgggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13609967 |
tgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacctcccataggttattaatgatttatcaaagagaactcttaagccaatttcgggatg |
13609868 |
T |
|
| Q |
201 |
aaatccacgaaaatctaaaactttcttcacgtatgtctc |
239 |
Q |
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| T |
13609867 |
aaatccacgaaaatctaaaactttcttcacgtatgtctc |
13609829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31246013 - 31245778
Alignment:
| Q |
1 |
tttaccattttttccgagataacattgtggacatccttgtggtcccacaacctgttccactttcttggttctttgggtgatttttctttaatgatactcc |
100 |
Q |
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|||||||| ||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
31246013 |
tttaccatgttttctgatataacattgtggacatccttgtagtcccacatcctgttccactttcttggttctttgggtgatttttccctaacgatactct |
31245914 |
T |
|
| Q |
101 |
tgccaagttcttttaacaaacgatgcatagaaatcgtagaaaacc--tcccataggttattaatgatttatcaaagagaactcttaagccaatttcggga |
198 |
Q |
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| T |
31245913 |
tgcctagttctttgaacaaatcatgcataaaaattct-----cccgttctcacaggttatgaatgacttatcaacaagaactcttaaaccaatttcagga |
31245819 |
T |
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| Q |
199 |
tgaaatccacgaaaatctaaaactttcttcacgtatgtctc |
239 |
Q |
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| T |
31245818 |
tgaaatccacgaaaatctaaaactttattcacgtatgtctc |
31245778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 31477747 - 31477688
Alignment:
| Q |
162 |
tgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaac |
221 |
Q |
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||||||||||| |||||||||||| ||||| |||| ||||||||||| | ||| |||||| |
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| T |
31477747 |
tgatttatcaatgagaactcttaatccaatatcggcatgaaatccacaacaatttaaaac |
31477688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 6472464 - 6472597
Alignment:
| Q |
1 |
tttaccattttttccgagataacattgtggacatccttgtggtcccacaacctgttccactttcttggttctttgggtgatttttctttaatgatactcc |
100 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||| |||||||||| ||| ||| ||| |
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| T |
6472464 |
tttaccatgttttctgagataacattgtgaacatctttgtagtcccacaaccagttccactttcttggttctttcattgatttttctctaacgatgctct |
6472563 |
T |
|
| Q |
101 |
tgccaagttcttttaacaaacgatgcatagaaat |
134 |
Q |
| |
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| ||||||||||| |||||| ||||||| |||| |
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| T |
6472564 |
tcccaagttctttgaacaaatcatgcatacaaat |
6472597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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