View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_58 (Length: 233)
Name: NF0223_low_58
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 830479 - 830343
Alignment:
| Q |
1 |
cccttcaatctcttccctctgctttttgctctgattctcgtgaagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtc |
100 |
Q |
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| T |
830479 |
cccttcaatctcttctctctgcttccggctccgattctcgtgacgcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtc |
830380 |
T |
|
| Q |
101 |
gtttaaaatttactgcggtgtcgctggtttttatgat |
137 |
Q |
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| T |
830379 |
gtttaaaatttactgcggtgtcgctggtttttatgat |
830343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 49235046 - 49234981
Alignment:
| Q |
72 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgat |
137 |
Q |
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| T |
49235046 |
cttgaacgccgtttgttttatattccttcgtttaagatttatcgcggtgttgctggtttttatgat |
49234981 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 941968 - 941864
Alignment:
| Q |
33 |
gattctcgtgaagcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggttttt |
132 |
Q |
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||||| |||||||||||||||||||| ||| ||||| |||||||| ||| | ||||| ||||| |||||||| ||||| | ||||| |||||||||| |
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| T |
941968 |
gattcgcgtgaagcatttcgtcaatctgttaacaatacgcttgaacgccgtttgttttatattccttcgtttaagatttatcgtggtgttgctggttttt |
941869 |
T |
|
| Q |
133 |
atgat |
137 |
Q |
| |
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||||| |
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| T |
941868 |
atgat |
941864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 50861624 - 50861689
Alignment:
| Q |
72 |
cttgaacgtcgtcttttttacattccgtcgtttaaaatttactgcggtgtcgctggtttttatgat |
137 |
Q |
| |
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|||||||| ||| | ||||| |||||||||||||| ||||| ||||||| ||||||||| ||||| |
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| T |
50861624 |
cttgaacgccgtttgttttatattccgtcgtttaagatttatcgcggtgttgctggttttaatgat |
50861689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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