View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0223_low_63 (Length: 217)
Name: NF0223_low_63
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0223_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13610331 - 13610118
Alignment:
| Q |
1 |
acttgaaagaaaattgagacttcctgagaaattcaaatcacacagcttgagcaatttaaggcgagtcatctttgctaaagcttcagccctcaatgttgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13610331 |
acttgaaagaaaattgagacttcctgagaaattcaaatcacgcagcttgagcaatttaaggcgagtcatctttgctaaagcttcagccctcaatgttgtc |
13610232 |
T |
|
| Q |
101 |
attgcttctacttcagccttattttctggacatcgctccataactatggcttcaaggttctctgtcgcctacaatattgtaaataacattgataacacta |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13610231 |
attgcttctacttcagccttattttctgtacatcgctccataactatggcttcaaggttctctgtcgcctacaatattgcaaataacattgataacacta |
13610132 |
T |
|
| Q |
201 |
catagttcaaagtt |
214 |
Q |
| |
|
|||||||||||||| |
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| T |
13610131 |
catagttcaaagtt |
13610118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 31246273 - 31246088
Alignment:
| Q |
5 |
gaaagaaaattgagacttcctgagaaattcaaatcacacagcttgagcaatttaaggcgagtcatctttgctaaagcttcagccctcaatgttgtcattg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| | |||||||||||||| |||||||||||||| |
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| T |
31246273 |
gaaagaaaattgagacttcctgagaaattcaaattccacagcatgagcaatttaaggcgactcatttgtgctaaagcttcagttctcaatgttgtcatcc |
31246174 |
T |
|
| Q |
105 |
cttctacttcagccttattttctggacatcgctccataactatggcttcaaggttctctgtcgcctacaatattgtaaataacatt |
190 |
Q |
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| | || ||| | ||||||||||| | ||| || |||||||||||||||||| ||| ||||||| ||||| |||| ||||| |
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| T |
31246173 |
cctgtatttcttcaatattttctggataacgcctcagaactatggcttcaaggtttgatgttgcctacagtattgcaaatgacatt |
31246088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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