View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0223_low_7 (Length: 480)
Name: NF0223_low_7
Description: NF0223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0223_low_7
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 5326238 - 5326663
Alignment:
Q
11
cagagagagcaacaatcttaatcacccttgccattatttgttatcaatatatgttccaaatgcaaattgtaaattgtaaatgaattgatttgttttgtta
110
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| ||||||||||||||
T
5326238
cagagagagcaacaatcttaatcacccttgccattatttgttatcaatatgt--------tgcaagttgtagattgtaaatgaat-gatttgttttgtta
5326328
T
Q
111
ttgaaaagaatgtgnnnnnnnnnnnnnnnnngatggtgctcgtaaatattatattacgtggggtatagtaaatggtaataacatatatatccttgttgtt
210
Q
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
T
5326329
ttgaaaagaatgtgatatatttatatata--gatggtgctcgtaaatattatattacgtagggcatagtaaatggtaataacatatatatccttgttgtt
5326426
T
Q
211
gccagattctaaattccaaattggattcgtgctacaattttaaattctccagttgcaatggcaaaagtatagtgttatannnnnnnnataaagaaaagta
310
Q
||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||||||||||||
T
5326427
gccagattctaaattccaaattggattcgtgcttcaattttaaattacccggttgcaatggcaaaagtatagtgttatattttttt-ataaagaaaagta
5326525
T
Q
311
tggtgttatttgtgtgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacagtaattttaaggaatgaagacaacactaatggaggt
410
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
5326526
tggtgttatttgtgtgatacgtaagtgatgacaacattaattttaaggaatcctctaaaaaacattaattttaaggaatgaagacaacactaatggaggt
5326625
T
Q
411
gaagaataaaaattaataccgccatgacctaccccaat
448
Q
|||||||||||||||||||||||||||||||| |||||
T
5326626
gaagaataaaaattaataccgccatgacctactccaat
5326663
T
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Target Overview ] [
Alignment Overview ]
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