View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_high_22 (Length: 307)
Name: NF0225_high_22
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 27607395 - 27607658
Alignment:
| Q |
30 |
actttttgggctccacaactagaagatgctgggataagaccagactagtcagtgatttcatttttccgagtctaaggagaggcagccatgtgtatcaact |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27607395 |
actttttgggctccacaactagaagatgctgggataagaccagactactcagtgatttcatttttccgagtctaaggagaggcagccatgtgtatcaact |
27607494 |
T |
|
| Q |
130 |
gacatgtatattactatcttataaaatagcttaggttaccggtaatctattaattttttagaaattgcaagctgacccctaaatgaatatgggtgaagcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27607495 |
gacatgtatattactatcttataaaatagcttaggttaccggtaatctattaattttttagaaattgcaagctgacccctaaatgaatatgggtgaagcc |
27607594 |
T |
|
| Q |
230 |
tctgatttttgttcctcactcgatcctcctagcactctaactcgtgcacagtacaattatcgtc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27607595 |
tctgatttttgttcctcactcgatcctcctagcattctaactcgtgcacagtacaattatcgtc |
27607658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2826 times since January 2019
Visitors: 2404