View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_27 (Length: 282)
Name: NF0225_high_27
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 39077228 - 39077501
Alignment:
| Q |
1 |
ctgttgcatttggaattggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtct |
100 |
Q |
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| T |
39077228 |
ctgttgcatttggaattggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtct |
39077327 |
T |
|
| Q |
101 |
gtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtatacctta |
200 |
Q |
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| T |
39077328 |
gtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtatacctta |
39077427 |
T |
|
| Q |
201 |
ctatgtctgtcttttctacctgttgcccttacaatgtggcctccttgaacttgaactatttctcctcctatgct |
274 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39077428 |
ctatgtctgtcttttctacctgtcgcccttacaatgtggcctccttgaacttgaactatttctcctcctgtgct |
39077501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 30768268 - 30768521
Alignment:
| Q |
15 |
attggattccatggtggaagctgatcaagtttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagac |
114 |
Q |
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| T |
30768268 |
attggatgccatggaggaagctccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggc |
30768367 |
T |
|
| Q |
115 |
ggtcttgaacatcatagaattgaattgctgtgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttt |
214 |
Q |
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| T |
30768368 |
gatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
30768467 |
T |
|
| Q |
215 |
tctacctgttgcccttacaatgtggcctccttgaacttgaactatttctcctcc |
268 |
Q |
| |
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| T |
30768468 |
tttaccggtggctcgaactatgtgtcctccttctacttgaactatctctcctcc |
30768521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 22328106 - 22327891
Alignment:
| Q |
54 |
gcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctg |
153 |
Q |
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| T |
22328106 |
gcagatttagcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctg |
22328007 |
T |
|
| Q |
154 |
ataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctgttgcccttacaatgtggcctccttgaacttg |
253 |
Q |
| |
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| | ||| ||||| || ||||| ||||||||||| ||| | || ||||| || | |||||| | ||||||| | |||||||| |||||||| || | |
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| T |
22328006 |
agagtcgtacacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtctttccgtcctgttgaacggacaatgtgacctccttgtacctc |
22327907 |
T |
|
| Q |
254 |
aactatttctcctcct |
269 |
Q |
| |
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|| |||||||||||| |
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| T |
22327906 |
cacgatttctcctcct |
22327891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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