View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_35 (Length: 257)
Name: NF0225_high_35
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 28595160 - 28595383
Alignment:
| Q |
28 |
tgatgcacaattgtcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgt |
127 |
Q |
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| T |
28595160 |
tgatgcacaattgtcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgccattcgtactgctgtctctaaggagcgtcgt |
28595259 |
T |
|
| Q |
128 |
atggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgattaatcatataaagtat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595260 |
atggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgattaatcatataaagtat |
28595359 |
T |
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| Q |
228 |
tcattatgatcatattaattagtt |
251 |
Q |
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|||||||||||||||||||||||| |
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| T |
28595360 |
tcattatgatcatattaattagtt |
28595383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 32493382 - 32493538
Alignment:
| Q |
28 |
tgatgcacaattgtcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgt |
127 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| |
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| T |
32493382 |
tgatgcacaattgtcttctacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtctctaaagagcgtcgt |
32493481 |
T |
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| Q |
128 |
atggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagt |
184 |
Q |
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| T |
32493482 |
atggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagt |
32493538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 28587650 - 28587496
Alignment:
| Q |
28 |
tgatgcacaattgtcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgt |
127 |
Q |
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|||||| ||||| |||||||| ||||| || |||| |||||||||||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
28587650 |
tgatgcccaattatcttctacattttatgacagtacttgccctaatgcactaagcaccatcagaacttcgattcgtactgcaatctctaaggagcgtcgt |
28587551 |
T |
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| Q |
128 |
atggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaatta |
182 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
28587550 |
atggctgcatctctcattcgtcttcactttcatgattgttttgtgcaggtaatta |
28587496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 28592811 - 28592663
Alignment:
| Q |
41 |
tcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgtcgtatggctgcatctc |
140 |
Q |
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|||||||| || ||||| |||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
28592811 |
tcttctactttctacgacagtacatgccctaatgccttaagcactattagaacttcgattcgtactgctgtctctaaggagtgtcgcatggcggcatctg |
28592712 |
T |
|
| Q |
141 |
tcattcgtcttcattttcatgattgttttgtccaggtaattagtatatt |
189 |
Q |
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||||||| |||||||||||||| ||||||||||| ||||||| |||||| |
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| T |
28592711 |
tcattcgccttcattttcatgactgttttgtccaagtaattactatatt |
28592663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 32493545 - 32493596
Alignment:
| Q |
207 |
ttgattaatcatataaagtattcattatgatcatatta-attagttaattga |
257 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
32493545 |
ttgattaaccatataaagtattcattatgatcatattatattagtttattga |
32493596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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