View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_high_4 (Length: 482)
Name: NF0225_high_4
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 469
Target Start/End: Complemental strand, 3658813 - 3658374
Alignment:
| Q |
30 |
cttacatccaccaaaatgcaaagaagactctaaatcttgcatacaagcagacagcaagcaactattggtgatgtatttagcactttatgtcacagccctc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3658813 |
cttacatccaccaaaatgcaaagaagactctaaatcttgcatacaagcagacagcaagcaactattggtgatgtatttagcactttatatcacagccctc |
3658714 |
T |
|
| Q |
130 |
ggcactggcggtctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaagaagggtatgattaaatttttcagct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658713 |
ggcactggcggtctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaagaagggtatgattaaatttttcagct |
3658614 |
T |
|
| Q |
230 |
ggttctattttttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggtagaggttggggttacggtatttgtgc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658613 |
ggttctattttttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggtagaggttggggttacggtatttgtgc |
3658514 |
T |
|
| Q |
330 |
ggtcgcaattgtggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtagtcctttgactcagattgcggtcgtg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658513 |
ggtcgcaattgtggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtagtcctttgactcagattgcggtcgtg |
3658414 |
T |
|
| Q |
430 |
tttgtggctgcttggaggaagagacacatgcaattgccct |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658413 |
tttgtggctgcttggaggaagagacacatgcaattgccct |
3658374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 467
Target Start/End: Complemental strand, 3646305 - 3645943
Alignment:
| Q |
105 |
tttagcactttatgtcacagccctcggcactggcggtctaaaatctagtgtctctggctttggttccgatcaatttgatgattcagatgaccaagaaaag |
204 |
Q |
| |
|
|||||| ||||||||||| || || ||||| || ||| ||||||| |||||| ||||||||||||| ||||||||||||| | | ||| | |||| ||| |
|
|
| T |
3646305 |
tttagcgctttatgtcactgcacttggcacagggggtttaaaatccagtgtccctggctttggttcagatcaatttgatgctactgataaagaagagaag |
3646206 |
T |
|
| Q |
205 |
aagggtatgattaaatttttcagctggttctattttttcgtaagcatagggtctttggcagcagtgactgttcttgtgtacatacaagataaccaaggta |
304 |
Q |
| |
|
|| |||| |||||||| ||| |||| || || |||||| | |||| ||| | || ||||| || ||||| |||||||||||| | || |||| |
|
|
| T |
3646205 |
aaacatatggttaaatttctcaattggtattacttcatcgtaaacctaggatctcttatggcggtgacggtccttgtttacatacaagatcatcagggta |
3646106 |
T |
|
| Q |
305 |
gaggttggggttacggtatttgtgcggtcgcaattgtggttgcgctccttgttttcttgtccggtacccgcaagtaccggatcaagcaacttgtcggtag |
404 |
Q |
| |
|
||| ||||||||| ||||| ||||| | |||||| | || || |||| || |||| || ||| | ||||| ||| |||| ||| || ||||| |
|
|
| T |
3646105 |
gagattggggttatggtatatgtgcttgttctattgtgctagcacttgttgtgtttttgtttggaacctgtaagtatcggtacaagaaaccggtaggtag |
3646006 |
T |
|
| Q |
405 |
tcctttgactcagattgcggtcgtgtttgtggctgcttggaggaagagacacatgcaattgcc |
467 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
3646005 |
tcccttgactcagattgcggtagtgtttgtggccgcttggaggaagaggcacttgcaattgcc |
3645943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 41873045 - 41873097
Alignment:
| Q |
400 |
ggtagtcctttgactcagattgcggtcgtgtttgtggctgcttggaggaagag |
452 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||||||||||||||||||| |
|
|
| T |
41873045 |
ggtagtcctttgactcagattgcagtggtttatgtggctgcttggaggaagag |
41873097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2057 times since January 2019
Visitors: 2396