View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_high_5 (Length: 472)
Name: NF0225_high_5
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 24 - 443
Target Start/End: Original strand, 6959308 - 6959730
Alignment:
| Q |
24 |
tcatcattgttggtttgatgaaaacaa---aagacgagttagttgagttttgaggtagacatattcattttcccttgttttgatcgaacctattgcatca |
120 |
Q |
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| T |
6959308 |
tcatcattgttggtttgatgaaaacaagaaaagacgagttagttgggttttgaggtagacatattcattttcccttgttttgatcgaacctattgcatca |
6959407 |
T |
|
| Q |
121 |
cgtacataatgaagatagaaataaggatagtagtgatgacttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctc |
220 |
Q |
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| T |
6959408 |
cgtacataatgaagatagaaataaggatagtagtgatgacttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctc |
6959507 |
T |
|
| Q |
221 |
atgttagttagcatatggattagaaagtttataaatacttgtaatacaagttagttacaataatgagaaacacatttttctattttcttctcaattcata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959508 |
atgttagttagcatatggattagaaagtttataaatacttgtaatacaagttagttacaataatgagaaacacatttttctattttcttctcaattcata |
6959607 |
T |
|
| Q |
321 |
atagaaccgacactaatcaagtcagcgtatcagtcacgagaatgaggaaggcagtgaaattcagctttgagaagacaatgtctgttattgttgaagtctt |
420 |
Q |
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| T |
6959608 |
atagaaccgacactaatcaagtcagcgtatcagtcacgaggatgaggaaggcagtgaaattcagctttgagaagacaatgtctgtcattgttgaagtctt |
6959707 |
T |
|
| Q |
421 |
gaacgatttataattatcattcc |
443 |
Q |
| |
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| T |
6959708 |
gaacgatttataattatcattcc |
6959730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 4318270 - 4318340
Alignment:
| Q |
254 |
aatacttgtaatacaagttagttacaat-aatgagaaacacatttttctattttcttctcaattcataata |
323 |
Q |
| |
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||||||||| ||| ||| ||||| |||| |||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
4318270 |
aatacttgttatataagctagtttcaatcaatgagaatcacatttttctattctcttctcaactcataata |
4318340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 22498776 - 22498660
Alignment:
| Q |
160 |
cttgcatagcaagtaactaaggaagttagttatcagtgtagcaatactatgcattaagctcatgttagttagcatatggattagaaagtttataaatact |
259 |
Q |
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||||||||||||||||||||| |||||||||| | | | | ||| ||||||| |||| ||||||||||||||||| ||||||| || |||| ||||| |
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| T |
22498776 |
cttgcatagcaagtaactaagatagttagttatga-tattggaatcctatgcaataagatcatgttagttagcataaggattagtttgtgtatatatact |
22498678 |
T |
|
| Q |
260 |
tgtaatacaagttagtta |
277 |
Q |
| |
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|| ||||||||||||| |
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|
| T |
22498677 |
tgctgtacaagttagtta |
22498660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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