View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_low_11 (Length: 429)
Name: NF0225_low_11
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 36 - 419
Target Start/End: Original strand, 10037576 - 10037959
Alignment:
| Q |
36 |
acctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaagagctgggtatacca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10037576 |
acctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaagagctgggtatacca |
10037675 |
T |
|
| Q |
136 |
tggaagtaagtttcttttaagttgattaggttgataagaaacatttgcnnnnnnnnnnnnnnnnnccttcctagtctcctctctttctttcggaggactg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
10037676 |
tggaagtaagtttcttttaagttgattaggttgataagaaacatttgcttttttattgattttttccttcctagtctcctctctttctttcagaggactg |
10037775 |
T |
|
| Q |
236 |
gtgcatcctttgcggttcatccagaataaataatttttatgtatttgaatttattcatgtgaggattacaagagcttgggaaatatgttaatattgttta |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10037776 |
gtgcatcctttgcggttcatccagaataaataatttttatgtatttgaatttattcatgtgaggattacaagagcttgggaaatatgttaatattgttta |
10037875 |
T |
|
| Q |
336 |
accttccaacttacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcacaggtt |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10037876 |
accttcaaacttacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcataggtt |
10037959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 48482945 - 48482863
Alignment:
| Q |
39 |
tgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
121 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||| || ||||| |||||||| |
|
|
| T |
48482945 |
tgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
48482863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 48482640 - 48482568
Alignment:
| Q |
347 |
tacagttgcattccatggtgaagaatgggactacaataacaaagaagataatatactgcgcagttcacaggtt |
419 |
Q |
| |
|
||||||||| ||| | |||||||| |||||| ||||||| ||| | ||||||| ||||||||||||||||| |
|
|
| T |
48482640 |
tacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatattgcgcagttcacaggtt |
48482568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2691 times since January 2019
Visitors: 2402