View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_19 (Length: 362)
Name: NF0225_low_19
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 885820 - 885493
Alignment:
| Q |
1 |
ctctttgtgtgttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatttgtatatatacataatgtgtggagtatatgagaattg |
100 |
Q |
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| T |
885820 |
ctctatgtgtgttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatt-gtatatatacataatgtgtggagtatatgagaattg |
885722 |
T |
|
| Q |
101 |
atgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttct |
200 |
Q |
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| T |
885721 |
atgtgcgaaatgtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttct |
885622 |
T |
|
| Q |
201 |
attactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatcttacattttgttaatgtacataaagtgcatta |
300 |
Q |
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| T |
885621 |
attactatatgtggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatctttcattttgttaatgtacataaagtgcatta |
885522 |
T |
|
| Q |
301 |
ttccaattattatgaatcatgaaacccca |
329 |
Q |
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| T |
885521 |
ttcctattattatgaatcatgaaacccca |
885493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 1849159 - 1849107
Alignment:
| Q |
224 |
attatgcatttcaaggcctaataaaaggg-gaaaatctagttcatcttacatt |
275 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||||||| |||| |
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| T |
1849159 |
attatgcatttcaaggcctaatataagggaaaaaaactagttcatctttcatt |
1849107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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