View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0225_low_2 (Length: 632)
Name: NF0225_low_2
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_2 |
 | |
|
| [»] scaffold0793 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 714447 - 714744
Alignment:
| Q |
1 |
aatgtataattgtatatggataataatgtattttatcacagaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaagggttcactga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
714447 |
aatgtataattgtatatggataataatgtattttatcacagaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaagggttcactga |
714546 |
T |
|
| Q |
101 |
atgactgactacccaagcaatgtctaactaataatcaaatactgacnnnnnnnncattccaaacataaatggtaaatgtcaaactaatgcaataatcgct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
714547 |
atgactgactacccaaccaatgtctaactaataatcaaatactgacaaaaaaaacattccaaacataaatggtcaatgtcaaactaatgcaatcatcgct |
714646 |
T |
|
| Q |
201 |
ttgacaccactttgtcattagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaac |
298 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
714647 |
ttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaac |
714744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 299 - 546
Target Start/End: Original strand, 714774 - 715030
Alignment:
| Q |
299 |
actagacaagtactcatacaatcctataaagtttctagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataatt |
388 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
714774 |
actagactagtactcatacaatcctataaagtttctagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataatt |
714873 |
T |
|
| Q |
389 |
ttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatcta |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
714874 |
ttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatcta |
714972 |
T |
|
| Q |
489 |
tgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
714973 |
tgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
715030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 334 - 551
Target Start/End: Original strand, 752134 - 752360
Alignment:
| Q |
334 |
tagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
752134 |
tagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
752233 |
T |
|
| Q |
424 |
gattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
752234 |
gattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatctatgatcactagattatcatacacgcagcaaaatttg |
752332 |
T |
|
| Q |
524 |
cgtctaattacaataaccctgatgatgt |
551 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
752333 |
cgtctaattacaataaccctgatcatgt |
752360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 478 - 551
Target Start/End: Complemental strand, 731026 - 730953
Alignment:
| Q |
478 |
tacaccatctatgatcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgt |
551 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
731026 |
tacaccatctatgatcattagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgt |
730953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 3765118 - 3765420
Alignment:
| Q |
1 |
aatgtataattgtatatggataataatgtattttatcacagaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaagggttcactga |
100 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
3765118 |
aatgaataattgtatatgaataataatgtattttatcacataaaccatcaagcgaataaaataataagtcgtaataaaacagctataaggggttcactga |
3765217 |
T |
|
| Q |
101 |
atgactgactacccaagcaatgtctaactaataatcaaatactgac-----nnnnnnnncattccaaacataaatggtaaatgtcaaactaatgcaataa |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||||| | ||||||||||| ||||||| | |
|
|
| T |
3765218 |
atgactgactacccaaccaatgtctaactaataattaaatactgacaaaaaaaaaaaaacattccaaaaataaatgatcaatgtcaaactcatgcaatca |
3765317 |
T |
|
| Q |
196 |
tcgctttgacaccactttgtcattagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatc |
295 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3765318 |
tcgctttgacaccattttgtccttagcttatgtaatttgttctattgtcttgggtagtttgaagctaatcatgtgttgatgtattgagttgtaaatcatc |
3765417 |
T |
|
| Q |
296 |
aac |
298 |
Q |
| |
|
||| |
|
|
| T |
3765418 |
aac |
3765420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 311 - 546
Target Start/End: Original strand, 4062 - 4306
Alignment:
| Q |
311 |
ctcatacaatcctataaagtttctagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaa |
400 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4062 |
ctcatccaatcctctcaagtttctagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaa |
4161 |
T |
|
| Q |
401 |
aatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcnnnnnnnccaaattcctacaccatctatgatcactagat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4162 |
aatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatc-aaaaaaccaaattcctacaccatctatgatcactagat |
4260 |
T |
|
| Q |
501 |
tatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4261 |
tatcatacacgcagcaaaatttgcgtctaattacaataaccctgat |
4306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 551
Target Start/End: Original strand, 2932 - 2992
Alignment:
| Q |
491 |
atcactagattatcatacacgcagcaaaatttgcgtctaattacaataaccctgatgatgt |
551 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2932 |
atcactagattatcatacaccatgcaaaatttgcgtctaattacaataaccctgatcatgt |
2992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 298
Target Start/End: Original strand, 801989 - 802019
Alignment:
| Q |
268 |
gtgttgatgtattgagttgtaaatcatcaac |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
801989 |
gtgttgatgtattgagttgtaaatcatcaac |
802019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2199 times since January 2019
Visitors: 2399