View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_29 (Length: 307)
Name: NF0225_low_29
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 41472639 - 41472822
Alignment:
| Q |
1 |
gtacgcatttgaatcttgctatatttacaaagacatcatcataatcaatcgattaatataaatgcaaacacattctcaaaatctaaacctctaaaacaga |
100 |
Q |
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| T |
41472639 |
gtacgcgtttgaatcttgctatatttacaaagacatc---ataatcaatcgattaatataaatgcaaacacattctcaatatctaaacctctaaaacaga |
41472735 |
T |
|
| Q |
101 |
aagtcattctcaatgtctgaagttctaaagcataaagtatcatggtttggtcctattcaccatatttgtcttagaaattagttaaag |
187 |
Q |
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| T |
41472736 |
aagtcgttctcaatgtctgaagttctaaagcataaagtatcatggtttggtcctattcaccgtatttgtcttagaaattagttaaag |
41472822 |
T |
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