View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_3 (Length: 541)
Name: NF0225_low_3
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 49 - 532
Target Start/End: Complemental strand, 23908708 - 23908226
Alignment:
| Q |
49 |
cgtctcttattgtcaacttaatagcagcgcgttccataagtcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23908708 |
cgtctcttattgtcaacttaatagcagcgcgttccataatgcttcttttctcgagacggtaatgattccttccttatctacttgattaaaatggtttcaa |
23908609 |
T |
|
| Q |
149 |
ataatctgatctgggaattttcatccgtnnnnnnnggcattcattatgtgacctttcatgaggcattcgatagcaaacaattgccaaatgcttgacagtt |
248 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
23908608 |
ataatctgatctgggaattttcatccgtaaaaaaaggcattcattatgtgacctttcatgaggcatttgatagcaaacaatttccaaatgcttgacagtt |
23908509 |
T |
|
| Q |
249 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaacttatatgataatttgtgtcaaaatcaagatattttttggac |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
23908508 |
gacatctttcagagacatctttgatagcatatagaatcgtataacattttgtacagaatat-tatgataatttgtgtcaaaatcaagatattttttggac |
23908410 |
T |
|
| Q |
349 |
atgggagagaaagttagaatcgtaaattgtgtgatcgtaacatagattgtggcaaaattccaagtagaaacctcaacaaccaagattttccaccaaacta |
448 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23908409 |
atgggagagaaagttagaattgtaaattgtgtgatcgtaacatagattgtggcaaaattccaagtagaaacctcaacaaccaagattttccaccaaacta |
23908310 |
T |
|
| Q |
449 |
agtaccgccgctctttaccacagacctttatgatccccctactagccaaagttgtttctcgttatttagcctcagcagtataat |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
23908309 |
agtaccgccgctctttaccacagacctttatgatccccctactagccaaagttgtttctcgttatttagcctcaacaatataat |
23908226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 23908845 - 23908731
Alignment:
| Q |
23 |
gatattacttcctttcgtctcttttccgtctcttattgtcaacttaatagcagcgcgttccataagtcttcttttctcgagacggtaatgattccttcct |
122 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23908845 |
gatattacttcctttcatctcttttccgtctcttattgtcaacttaatagcagcgcgttccataatgcttcttttctcgagacggtaatgattccttcct |
23908746 |
T |
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| Q |
123 |
tatctacttgattaa |
137 |
Q |
| |
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||||||||| ||||| |
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|
| T |
23908745 |
tatctacttaattaa |
23908731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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