View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0225_low_39 (Length: 262)
Name: NF0225_low_39
Description: NF0225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0225_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 47665834 - 47665951
Alignment:
| Q |
1 |
cctcgtcttatataaactttaaacatctctttcaaatttcattaaacacatatttacattccaccttcattaaaattaaatccctagctaatccattctc |
100 |
Q |
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| T |
47665834 |
cctcgtcttatataaactttaaacatctctttcaaatttcattaaacacatatttacattccaccttcatta-----aaatccctagctaatccattctc |
47665928 |
T |
|
| Q |
101 |
tcttcttttgaagttctgatcac |
123 |
Q |
| |
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| T |
47665929 |
tcttcttttgaagttctgatcac |
47665951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 47665947 - 47666021
Alignment:
| Q |
159 |
atcacacaaattaattatgggtagcaataacatgataaagttgttcttgttgacaacattaattcttcttgtatt |
233 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47665947 |
atcacacaaattaattatgggtagcaataacatgataaagttgttcttgttgacaacattaattcttcttgtatt |
47666021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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